Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60337g00001 AAACCAGACGGTGGTAAAAAAGGCCATCATGTAGCACTTGCTTTTGGTGCAAGTTTTGGTGCCGCGTTTGTCATTGTGATTATAGTTGGACTTCTAGTTTGGTGGCGTTATAGACACAATCAACAGATATTCTTTGATATTAATGAGCATTACGACCCAGAAGTGCGCCTTGGTCATTTAAAAAGGTATTCATTCAAAGAGCTTCGGGCCGCAACTGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGTTTTGGAATAGTTTACAAGGCATGCTTGAATGACGGATCCGTTGTGGCCGTTAAACGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACGATAAGTTTGGCTGTCCACCGAAATCTTCTGAGGCTTCGAGGGTTTTGCAGTACTCAGAATGAAAGACTCCTTGTTTATCCATATATGTCTAATGGCAGTGTAGCCTCTAGATTAAAAGGTTAG 492 0.4167 KPDGGKKGHHVALAFGASFGAAFVIVIIVGLLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMSNGSVASRLKG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60337g00001 163 SUPERFAMILY Protein kinase-like (PK-like) 47 162 IPR011009 -
Trme60337g00001 163 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 57 161 - -
Trme60337g00001 163 ProSiteProfiles Protein kinase domain profile. 75 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme60337g00001 163 Gene3D Phosphorylase Kinase; domain 1 44 151 - -
Trme60337g00001 163 FunFam Somatic embryogenesis receptor kinase 1 44 151 - -
Trme60337g00001 163 Pfam Protein kinase domain 76 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme60337g00001 163 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60337g00001 Trme-Chr60337 218 794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60337g00001 8 162 Receptor kinase-like Gene Family AT1G60800 78.710 8.20e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme60337g00001 Pkinase 5.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60337g00001 - - gmx:100784164 289.271