Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6032g00001 AGTGATAGTGACAATAAGATGGTCGTAGACAAAGATAAGGTGGATCAGGAAGGTTCTCTGGATTTGAATCTTGATGTTATATCTGCTGAAAATGAAAAGTATTTGCTGCGTATTGCTGATAACCATAACAAGGGTGATTTAGTAGAGGAAAAAGTATGTTGTTCGGAGACCAAAAAGGAACAAGACAACATGGAACTTGATGGTGTGGGTGACCTATTACCTTCATCTTCTGTTGTGAAGACAGAAGTTTCATCATGCTCCAGGGATGTTAACAATTCTTGTACATCTGACGGTGGAAAATATGAGGTGGATCTGCAAATGGATTCAGATTCAAGAAAGAAACCCAAAGTTGTATTTGAAAAAGAAGCCATAGACACCACAAGTGCGAGTATATCTTTGACACAGGAAAGCTTCCTAATGCAAATTTTTGGTACTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTCATGGAAAGTTATGGTGTAGTAAGCATGCTATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGTATCCTCAATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTTATTGATGCCGGACTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGAATGTCCAAGTGACGCATTCACTGACACATCAGCTGATAAGTGTTGGGAATCAGTTCTAAAGAGACTACATAATGAAATCATGGAGCGAAGGAATCGAGGTGAACTTCAACTTCCATCCTTAGAGCTTCTGAAAAGCGTTAACGGATTTAGAATGTTTGGCTTCCTTTTGCCGTCCATTATTCAGGCCATCGAAGCTCAAGATCCAAGTCATCAGTGTTCAGAATATTGGAATCACAAAGCTTTCCCTACATCTCCAGGCAGTGTCATCGATAACTGCAATTGTTCAAGTAGCCCTTTAGATAATAATGTCAATACCAAAGTTTTTGGTATCCATTTGATTGATCAGGCAAAGGACAACATAGGAGGATGTTGTCATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCCTGATGAGCTAAGCTCATTGCGCAAGTTACTCGATTCTGACACACAATGCTCCGAGTGGAGAACGGCATTGACATCACTGATGGATGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNCTTTGGATAGTCATATTTCAATTTAGTCATAAGTTAGGTTCATTCTTTTAG 1236 0.3722 SDSDNKMVVDKDKVDQEGSLDLNLDVISAENEKYLLRIADNHNKGDLVEEKVCCSETKKEQDNMELDGVGDLLPSSSVVKTEVSSCSRDVNNSCTSDGGKYEVDLQMDSDSRKKPKVVFEKEAIDTTSASISLTQESFLMQIFGTSVKPISLGSVVHGKLWCSKHAIYPKGFKSRVNFFSILNPTRICSYVSEVIDAGLLGPLFKVTMEECPSDAFTDTSADKCWESVLKRLHNEIMERRNRGELQLPSLELLKSVNGFRMFGFLLPSIIQAIEAQDPSHQCSEYWNHKAFPTSPGSVIDNCNCSSSPLDNNVNTKVFGIHLIDQAKDNIGGCCHSLEEMKSILQKASPDELSSLRKLLDSDTQCSEWRTALTSLMDXXXXXXXXXXXXXXXXXXLWIVIFQFSHKLGSFF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6032g00001 411 ProSiteProfiles FYR domain FYRC motif profile. 199 289 IPR003889 GO:0005634
Trme6032g00001 411 Gene3D - 143 283 - -
Trme6032g00001 411 SMART fyrc_3 203 297 IPR003889 GO:0005634
Trme6032g00001 411 FunFam Putative lysine-specific demethylase JMJ16 145 283 - -
Trme6032g00001 411 SMART fyrn_3 153 197 IPR003888 GO:0005634
Trme6032g00001 411 ProSiteProfiles FYR domain FYRN motif profile. 139 197 IPR003888 GO:0005634
Trme6032g00001 411 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 150 300 IPR040092 -
Trme6032g00001 411 Pfam F/Y rich C-terminus 201 288 IPR003889 GO:0005634
Trme6032g00001 411 Pfam F/Y-rich N-terminus 150 194 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6032g00001 Trme-Chr6032 3 1788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6032g00001 103 323 JUMONJI Transcription Factor Family AT1G30810 43.694 5.31e-54 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6032g00001 K11446 - gmx:100801775 508.449