Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60184g00001 ATGCCGGTTGTAACTTTAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCAAGCCCAAGAATGAAATCCCGAGCCCGGTTTTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAACCGGTGTTCGGGTTTGGCCATTCGGGTCAAATACTTTAACCGAGTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGTCCCTTGTTGATTTACACCAACTTGGTTCCAAAATTNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCACGGTGGTTGTAGCGCCGGCGGCGCCGCGACGGTGCAGTCATTGCGGTGTAACTAAGACTCCTCAGTGGCGAACTGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCATGTGGGGTCCGTTATAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCTAACCACCACCGGAAAGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 636 0.4277 MPVVTLTTTEKNPKGVVVSEPKPKNEIPSPVFTTFKTPVQTKARSKRTRTGVRVWPFGSNTLTESSSSSTTSSSTSSSPTSPLLIYTNLVPKXXXXXXXXXXXXXXXXXXXXXTVVVAPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIETGLSPSPVVPSF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60184g00001 211 ProSitePatterns GATA-type zinc finger domain. 125 150 IPR000679 GO:0006355|GO:0043565
Trme60184g00001 211 CDD ZnF_GATA 124 172 IPR000679 GO:0006355|GO:0043565
Trme60184g00001 211 SMART GATA_3 119 173 IPR000679 GO:0006355|GO:0043565
Trme60184g00001 211 MobiDBLite consensus disorder prediction 54 82 - -
Trme60184g00001 211 ProSiteProfiles GATA-type zinc finger domain profile. 119 155 IPR000679 GO:0006355|GO:0043565
Trme60184g00001 211 FunFam GATA transcription factor 117 200 - -
Trme60184g00001 211 Gene3D - 118 192 IPR013088 GO:0006355|GO:0008270
Trme60184g00001 211 MobiDBLite consensus disorder prediction 1 82 - -
Trme60184g00001 211 Pfam GATA zinc finger 125 159 IPR000679 GO:0006355|GO:0043565
Trme60184g00001 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 181 - -
Trme60184g00001 211 PANTHER GATA TRANSCRIPTION FACTOR 30 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60184g00001 Trme-Chr60184 132 767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60184g00001 33 211 C2C2-Gata Transcription Factor Family AT5G66320 55.435 1.31e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme60184g00001 GATA 5.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60184g00001 - - psat:127120186 248.825