Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60135g00001 TGGGCTGCAATAGCCTCACAATTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCACATTACTATCCAATTTCCAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACTCATCTTTATTCAACAATAACAACATTCCTTCTTTTGCAAGCAACAAATCTGATTCTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCTCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNTACTACTATAACAGATTTGGCTTCATCAACTCTTGCAAGCAATGTGAAGGAAGATTTTGAATGGAGAAACTACAAGTCATTTGATATTGGTTGTGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCATTGCAGCTCTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTAGAATAA 657 0.3151 WAAIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYYPISKSNSSIATRHMAQWESARLEAEARLSKDSSLFNNNNIPSFASNKSDSDSDYFLKIWNSEVGQSFRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTITDLASSTLASNVKEDFEWRNYKSFDIGCDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60135g00001 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 28 IPR017930 -
Trme60135g00001 218 Gene3D - 1 55 - -
Trme60135g00001 218 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 158 - -
Trme60135g00001 218 CDD SANT 1 24 IPR001005 -
Trme60135g00001 218 ProSiteProfiles Myb-like domain profile. 1 24 IPR001005 -
Trme60135g00001 218 SUPERFAMILY Homeodomain-like 1 33 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60135g00001 Trme-Chr60135 97 753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60135g00001 1 218 MYB Transcription Factor Family AT3G61250 49.774 1.52e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60135g00001 K09422 - gmx:100816569 215.312