Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme600440g00001 ATGAAGCCAGAAGAAATAAGTGGGATGGGTGCATCCAAATTTGAGGCTGAAATGGCTGTTTTGAAAAGGGCCAGTCATTCAAATCTTGTTCTTCTTTTAGGTTACTGCTTGGATGGGGATGAAATGCTTATCGTGTACGAGAACATGGGAGAGGGGACCCTAAGTAGATATCTTTTTTATTGGAAGGACAACGGACTCGAACCCCTCATGTGGAATAGGAGGTTGAGCATTGCCTTAGATG 241 0.4357 MKPEEISGMGASKFEAEMAVLKRASHSNLVLLLGYCLDGDEMLIVYENMGEGTLSRYLFYWKDNGLEPLMWNRRLSIALD 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme600440g00001 80 Pfam Protein tyrosine and serine/threonine kinase 11 60 IPR001245 GO:0004672|GO:0006468
Trme600440g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 7 79 IPR011009 -
Trme600440g00001 80 Gene3D Transferase(Phosphotransferase) domain 1 2 80 - -
Trme600440g00001 80 PANTHER OSJNBA0070M12.3 PROTEIN 4 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme600440g00001 Trme-Chr600440 1 241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme600440g00001 4 79 Receptor kinase-like Gene Family AT5G39000 43.421 7.35e-16 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme600440g00001 PK_Tyr_Ser-Thr 3.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme600440g00001 K00924 - gmx:100305404 103.605