Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme599094g00001 AGAGCTTCTGCTGAGGTGCTTGGGAAAGGAACATTTGGTACTGTTTATAAGGCTGCTTTAGAAGATGCAACAACGGTCGCGGTTAAGAGGTTAAAGGAGCTTACGGTTGGGAAACGCGAGTTCGAACAGCAGATGGAGATTGTGGGGAGGATTAGGCATGAGAATGTGGTTGGATTAAGGGCTTATTACTATTCAAAGGAAGAGAAACTTATGGTTTATGATTATTATGAACAAGGCAGTGTCTCAGCAATGTTACATGGTATG 264 0.428 RASAEVLGKGTFGTVYKAALEDATTVAVKRLKELTVGKREFEQQMEIVGRIRHENVVGLRAYYYSKEEKLMVYDYYEQGSVSAMLHGM 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme599094g00001 88 ProSitePatterns Protein kinases ATP-binding region signature. 7 38 IPR017441 GO:0005524
Trme599094g00001 88 SUPERFAMILY Protein kinase-like (PK-like) 5 87 IPR011009 -
Trme599094g00001 88 Coils Coil 86 88 - -
Trme599094g00001 88 Gene3D Phosphorylase Kinase; domain 1 2 75 - -
Trme599094g00001 88 ProSiteProfiles Protein kinase domain profile. 1 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme599094g00001 88 PANTHER OS05G0588300 PROTEIN 1 87 - -
Trme599094g00001 88 Pfam Protein tyrosine and serine/threonine kinase 5 86 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme599094g00001 Trme-Chr599094 2 265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme599094g00001 1 87 Receptor kinase-like Gene Family AT4G23740 77.011 2.06e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme599094g00001 PK_Tyr_Ser-Thr 2.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme599094g00001 - - aprc:113851984 164.081