Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59850g00001 ACTATACTATTGGATCTTCTTAGAGTTATCAGCCATCACCGGGCCCGGCTTGCAACACCAGTCCGTACCATACAGAAAATATATAGTGATGCTGACTTGGACAACATACCATACGCAGATTCCACATTTAATGGTGCTGGAACAGTATCTAACCGTCCGTTATTAGTGATTGAATCACCTTACAAGAACAGTGCAGATGATAAAACGAAAAGTCGAGCAGCACGTGCAANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNATAGGAGCACCAGATACCAAGGTTAGAGGAACACAAGATGACTCTGAGGTGGATGCCAAAGTCATGGCATCTAACTCTGATGCAAATGGAAACTCTAAACCTGATTCTGAAGTGAGTGAAAACAAGTCGCTCAAATCAAATGTAAACAAGGTAAATGTGGAGGTGCCAACCATGTCTTCTAATTCTACCTCCAAAGTAACTGGTTCCGAAGTAGATAACTCAACCCAGAAGGACATCCATGTCAAACAATCCAAGGGTCAAACCATTAAAAACATCAAACCGAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNTTGAAGAGAATATAGTACTGGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCTATTGATGAGGGGATTGACCCCGTGGCAACTCAAGAGGCAAAGGAAATGGCTTCACACCAGGGTGGAAATGGATCTCCAAAGGCTTCAGATGGGAATGTGAAGTAA 858 0.3392 TILLDLLRVISHHRARLATPVRTIQKIYSDADLDNIPYADSTFNGAGTVSNRPLLVIESPYKNSADDKTKSRAARAXXXXXXXXXXXXXXXXXXXXXXXXIGAPDTKVRGTQDDSEVDAKVMASNSDANGNSKPDSEVSENKSLKSNVNKVNVEVPTMSSNSTSKVTGSEVDNSTQKDIHVKQSKGQTIKNIKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENIVLGVALEGSKRTLPIDEGIDPVATQEAKEMASHQGGNGSPKASDGNVK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59850g00001 285 MobiDBLite consensus disorder prediction 118 185 - -
Trme59850g00001 285 MobiDBLite consensus disorder prediction 267 285 - -
Trme59850g00001 285 Coils Coil 73 76 - -
Trme59850g00001 285 MobiDBLite consensus disorder prediction 246 285 - -
Trme59850g00001 285 Coils Coil 234 236 - -
Trme59850g00001 285 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 271 IPR045042 -
Trme59850g00001 285 MobiDBLite consensus disorder prediction 96 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59850g00001 Trme-Chr59850 2 859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59850g00001 2 75 Mechanosensitive Ion Channel Family AT5G10490 57.895 1.94e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59850g00001 K22047 - gmx:100789444 253.447