Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59819g00001 ATGGAGAAAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCCGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCTTGTATCCAAATCTCATCAAATTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGCACAGTTGCTTTGTACAACTCGCTTCCTTCTCAATTACCACGTCTTTTCAACATCGATGAACCAGTGATGTTCATGGGAGCCGATGTGACACATCCTCATCCTCTCGACGATTCGAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATACGGTCTCAAACACATAGACAAGAAATCATCGCAGATCTCGGCGCAATGGTTGGAGAATTGCTTGACGATTTTTATCAAGAAGTAGAAAAACTCCCCAACAGAATAATTTTCTTCCGAGATGGTGTTAGCGAAACTCAATTTCACAAAGTGCTGCAAGAGGAACTTCAATCCATAAAACAAGCATGCTCATCAAG 536 0.4123 MEKKHKGYADLKRIAETSVGVVSQCCLYPNLIKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFNIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFHKVLQEELQSIKQACSS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59819g00001 178 SMART Piwi_a_2 1 178 IPR003165 GO:0003676
Trme59819g00001 178 Gene3D - 1 60 - -
Trme59819g00001 178 SUPERFAMILY Ribonuclease H-like 4 177 IPR012337 -
Trme59819g00001 178 ProSiteProfiles Piwi domain profile. 1 178 IPR003165 GO:0003676
Trme59819g00001 178 Gene3D - 69 178 IPR036397 GO:0003676
Trme59819g00001 178 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 177 - -
Trme59819g00001 178 Pfam Piwi domain 3 177 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59819g00001 Trme-Chr59819 85 620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59819g00001 8 178 Eukaryotic Initiation Factors Gene Family AT1G48410 50.000 1.84e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59819g00001 K11593 - gmx:100797755 336.65