Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59795g00001 ATGGCAGCTGTTAGAATAACTTCAAAAGACATAGTTTTCTGGTTTAGGTCTCCCACTGCTGCAGAAATCCGATGGGGTGGCGCAAAGCATGAACCTGGCGAACAAGATGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCTAGGAGCATACCGTGGAAAGACTTTGAAATGGACGCTATTCATTCGTTGCAGTTAATACTGAGAAATTCATCCAAAGATACAGCGATTATTGATTTAAACTCAAAGGCAATCAATACAAGACTTAATGATTTGAAGATTGAAGGGATGCAGGAATTGGAAGCAGTGACAAGTGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCGGTGGATGTTGATGGGATGGTCAATGGTTGGAATATCAAAATTGCCGATTTAACTGGTCTTCCAGTTGGCGAAGCGATTGGAAAACATTTACTCACACTTGTTGAGGATTCTTCAACTGATATAGTCAAGAAGATGCTTAATCTGGCACTGCAAGGCGAAGAAGAGAAAAATGTCCAATTCGAGATCAAAACGCACGGCTCTCAGATGGATTCTGGTCCTATTAGTTTGATAGTTAATGCGTGTGCAAGCAGGGATCTTCGTGAAAACGTAGTTGGAGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACTGTCATGGACAAATTCACCCGAATCGAAGGCGATTACAAGGCA 741 0.4197 MAAVRITSKDIVFWFRSPTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNSSKDTAIIDLNSKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKIADLTGLPVGEAIGKHLLTLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGSQMDSGPISLIVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59795g00001 247 FunFam Phytochrome 107 238 - -
Trme59795g00001 247 CDD PAS 122 228 IPR000014 -
Trme59795g00001 247 SMART pas_2 113 179 IPR000014 -
Trme59795g00001 247 Gene3D PAS domain 103 241 - -
Trme59795g00001 247 PANTHER OS08G0260000 PROTEIN 1 233 - -
Trme59795g00001 247 Gene3D - 1 83 IPR043150 -
Trme59795g00001 247 PRINTS Phytochrome signature 226 246 IPR001294 GO:0006355|GO:0009584
Trme59795g00001 247 PRINTS Phytochrome signature 10 29 IPR001294 GO:0006355|GO:0009584
Trme59795g00001 247 PRINTS Phytochrome signature 43 61 IPR001294 GO:0006355|GO:0009584
Trme59795g00001 247 PRINTS Phytochrome signature 114 130 IPR001294 GO:0006355|GO:0009584
Trme59795g00001 247 PRINTS Phytochrome signature 133 148 IPR001294 GO:0006355|GO:0009584
Trme59795g00001 247 PRINTS Phytochrome signature 206 223 IPR001294 GO:0006355|GO:0009584
Trme59795g00001 247 Pfam PAS fold 114 228 IPR013767 GO:0006355
Trme59795g00001 247 SUPERFAMILY PYP-like sensor domain (PAS domain) 117 224 IPR035965 -
Trme59795g00001 247 NCBIfam PAS domain S-box protein 118 234 IPR000014 -
Trme59795g00001 247 Pfam Phytochrome region 1 80 IPR013515 GO:0006355|GO:0009584
Trme59795g00001 247 SUPERFAMILY GAF domain-like 1 79 - -
Trme59795g00001 247 ProSiteProfiles PAS repeat profile. 111 181 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59795g00001 Trme-Chr59795 40 885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59795g00001 1 247 Histidine Kinase Gene Family AT1G09570 78.543 2.24e-132 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59795g00001 K12120 - gmx:100790763 436.802