Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5974g00001 ACTGAATCTGAGTTGATAAAAGATATTATCAAAGATGTTTTACAAAAACTGAATTACAAGTACACAAGTGAATTTAGATGTCTTTTCATTCCTGATAACAACTATTTTCAGATTGAGTCTTTATTAAAAGTTGATACGAAACAAGTTCAAATTATTGGAATATGGGGCATGGGAGGCATTGGTAAGACAACTCTTGCTGCTGCTATTTTTCATAGGGTCTCCTCCCAATATGAAGGTAGCTGTTTCTTAGAAAATGTGACAGAAGAATCAGAAAGGCATGGACTTAACTACATATGCAATAGACTCTTTTCCAAGTTATTGAAGGAAGATGTTGGTCTTGACACACCATTAGTAGTGCCTGCTATTGTTATGAGAAGACTCAGAAATATGAAAGCTTTTGTTGTACTAGATGGTGTGAATACTTCAAAACTTCTAGAAAACTTGGTTGGAATCGGACGCGACTGGCTAGGACCTAGTAGTAGAGTCATTGTGACAACTAGAGATAAACAGATACTTATAAGTGGAGGAGTTGACACAATACATCAAGTCGAGGAAATGAACTTCCATAATTCGTTTCGACTATTTAGCTTGAATGCCTTCCATAAAACTTTTCCTGAAGAGTCATATATGGAGCTCTCAAAAAGAGCAATTGATTACGCCAAAGGCAATCCTTTAGCTCTGAAAGTTTTGGGATCGTATCTTCGTTCCAAAAGTGAAATAGAATGGGACAGTGCACTCGATAAACTCAAAGAGGTTCCGAATGCAGAAATCCAGGAGGGAACTGATGAAGTTGAAGTTATATGGTTAGATATGACTCAAATTCCACCTATAAATTTAAGTCCCAAAGCATTCAAAAAGATGTCAAAACTAAGGTTACTTGCTTTCCAAGGAAACAAAAGGGACTTTAACAACTCTGTCTATTCTTCTAAGATAATAAATTCAGTGTACCTTCCATCGGGTCTTAAATTGTTGCCTAAAAATTTGAGATATTTTGAGTGGGATGGATATCCATCAAAGTCTCTGCCACCAACTTTCTGTCCTGAGAAGCTTGTTGAGCTCTCCCTGCCATACAACAATGTGGAAAAACTTTGGGATGGAGTACAGGTATGCATGACTCAAGTTTCTCTTATGTTTAAAAATTGA 1143 0.3657 TESELIKDIIKDVLQKLNYKYTSEFRCLFIPDNNYFQIESLLKVDTKQVQIIGIWGMGGIGKTTLAAAIFHRVSSQYEGSCFLENVTEESERHGLNYICNRLFSKLLKEDVGLDTPLVVPAIVMRRLRNMKAFVVLDGVNTSKLLENLVGIGRDWLGPSSRVIVTTRDKQILISGGVDTIHQVEEMNFHNSFRLFSLNAFHKTFPEESYMELSKRAIDYAKGNPLALKVLGSYLRSKSEIEWDSALDKLKEVPNAEIQEGTDEVEVIWLDMTQIPPINLSPKAFKKMSKLRLLAFQGNKRDFNNSVYSSKIINSVYLPSGLKLLPKNLRYFEWDGYPSKSLPPTFCPEKLVELSLPYNNVEKLWDGVQVCMTQVSLMFKN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5974g00001 380 Gene3D - 186 263 IPR042197 -
Trme5974g00001 380 Pfam NB-ARC domain 39 254 IPR002182 GO:0043531
Trme5974g00001 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 258 IPR027417 -
Trme5974g00001 380 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 265 368 IPR044974 GO:0006952
Trme5974g00001 380 Pfam Leucine Rich Repeat 349 368 IPR011713 -
Trme5974g00001 380 SUPERFAMILY L domain-like 264 371 - -
Trme5974g00001 380 PRINTS Disease resistance protein signature 220 234 - -
Trme5974g00001 380 PRINTS Disease resistance protein signature 126 140 - -
Trme5974g00001 380 PRINTS Disease resistance protein signature 51 66 - -
Trme5974g00001 380 Gene3D - 22 176 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5974g00001 Trme-Chr5974 337 1886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5974g00001 262 368 WRKY Transcription Factor Family AT5G45050 30.841 4.71e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5974g00001 - - ahf:112708791 373.629