Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59740g00001 ATGGAAGCAGTAGCAGCAGCCATAACAAAAAACAACAATGGTTATGATTCATTTTGCTTGACTCATGCTAATGCTAATANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNGGGAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCGGTTGTCCGTCTTGGTGGCGAGACGCTGACGATTTCTCAGGTAGCTGCCATTGCTGCACACGATGGTGCGACAGTAGAGCTGTCAGAATCTGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTTATGGAGAGTATGAACAAAGGTACCGACAGTTATGGTGTCACCACAGGGTTCGGCGCTACTTCGCACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAGCTCATAAGGTAA 429 0.4312 MEAVAAAITKNNNGYDSFCLTHANANXXXXXXXXXXXXXXXXXXXXGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDGATVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59740g00001 142 SUPERFAMILY L-aspartase-like 43 142 IPR008948 GO:0003824
Trme59740g00001 142 Coils Coil 24 26 - -
Trme59740g00001 142 Gene3D - 33 142 IPR024083 -
Trme59740g00001 142 PANTHER HISTIDINE AMMONIA-LYASE 45 142 IPR001106 -
Trme59740g00001 142 MobiDBLite consensus disorder prediction 123 142 - -
Trme59740g00001 142 Pfam Aromatic amino acid lyase 72 142 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59740g00001 Trme-Chr59740 282 710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59740g00001 47 142 Monolignol Biosynthesis Gene Families AT3G10340 83.505 2.73e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59740g00001 K10775 - gmx:100803857 177.948