Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59683g00001 ATGCAGCAGCAACAACAACAACAACTGTCTACATCACCTAATAAAATCAATAAAGAAGATGACGGAGCATCTGAATTAGCTTCTTGTAGAAAAAAGGCTAGAGTGTCCATTAGGGCACGATCAGATTTCTCATTGATGAGTGATGGGTGTAGATGGAGAAAGTATGGACAAAAGATATCAAAGGTTAATCCGTACTGTCCCCGGGCCTATTACCGTTGCAATATGGGATTGGGAACAACAACACCATGTCCCGTTCGTAAGCAGGTAATTTCACAATCTGAGCG 284 0.419 MQQQQQQQLSTSPNKINKEDDGASELASCRKKARVSIRARSDFSLMSDGCRWRKYGQKISKVNPYCPRAYYRCNMGLGTTTPCPVRKQVISQSER 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59683g00001 95 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 9 89 IPR044810 GO:0003700
Trme59683g00001 95 SUPERFAMILY WRKY DNA-binding domain 39 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme59683g00001 95 Gene3D WRKY domain 33 95 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme59683g00001 95 MobiDBLite consensus disorder prediction 1 17 - -
Trme59683g00001 95 MobiDBLite consensus disorder prediction 1 27 - -
Trme59683g00001 95 ProSiteProfiles WRKY domain profile. 41 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme59683g00001 95 SMART WRKY_cls 46 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme59683g00001 95 Pfam WRKY DNA -binding domain 48 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59683g00001 Trme-Chr59683 106 533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59683g00001 31 89 WRKY Transcription Factor Family AT4G04450 67.797 4.83e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme59683g00001 WRKY 8.6e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59683g00001 - - psat:127138760 138.272