Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5963g00001 ATGGTATCTATCATGGAAAGGGAACGAACTCGTAAACGACCTCGTCTCGCCTGGGATGCAGCTCCACCTCCCTCAATTCCACCGGCACAGAGAAATTTGGCGGTGGTTGGTGATGAAGGAATCGAAAAAAAGTATGCATCGCCGCCCAGGAGAGACGACGATCGCGATGGCCATTATGTGTTTAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCAGCAAAATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACGAGAGATTATGTAGCTATCAAGGTAATTAGAAGCATCAAGAAATATCGAGATGCAGCAATGATCGAGGTTGATGTGCTTGAACGTCTTACGAAGAGTGATGTGGGATGCTCACGGTATAATACCTGCTAA 408 0.4583 MVSIMERERTRKRPRLAWDAAPPPSIPPAQRNLAVVGDEGIEKKYASPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTRDYVAIKVIRSIKKYRDAAMIEVDVLERLTKSDVGCSRYNTC 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5963g00001 135 MobiDBLite consensus disorder prediction 1 31 - -
Trme5963g00001 135 SUPERFAMILY Protein kinase-like (PK-like) 58 123 IPR011009 -
Trme5963g00001 135 MobiDBLite consensus disorder prediction 1 16 - -
Trme5963g00001 135 ProSiteProfiles Protein kinase domain profile. 71 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5963g00001 135 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 32 130 - -
Trme5963g00001 135 Gene3D Phosphorylase Kinase; domain 1 43 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5963g00001 Trme-Chr5963 390 1406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5963g00001 55 127 EF-hand Containing Proteins AT5G22840 33.784 6.58e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trme5963g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5963g00001 K08287 - gmx:100782453 210.69