Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59627g00001 ATGTGGAGTTTTGGGGTCGTACTCTACGAGATCCTCACAGGAAGACGATCGTTAGAAAGGAACCGTCCAACAGCTGAACAGAAGCTATTAGATTGGGTTAAACAATATCCTGCTGACAGTAACAGATTCAGCATAATTATGGACCAGCGTCTTAGGAACCAATATCCGATCGCTGCGGCTCGCAAAATAGCGAAGTTAGCCGATAGTTGCTTGAAGAAGAATCCAGAAGATAGACCATCTATGAATCAGATAGTGGAAGGGTTGAAGCAAGCATTGCAATATTCAGAAATGTCAAACACTCCTCACGATAATGCTGAATCGTCTCGGTCTAAATTGGTTCAGAGAAGTAAATAG 354 0.4266 MWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSNRFSIIMDQRLRNQYPIAAARKIAKLADSCLKKNPEDRPSMNQIVEGLKQALQYSEMSNTPHDNAESSRSKLVQRSK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59627g00001 117 PANTHER OS01G0588500 PROTEIN-RELATED 2 92 - -
Trme59627g00001 117 Pfam Protein tyrosine and serine/threonine kinase 1 87 IPR001245 GO:0004672|GO:0006468
Trme59627g00001 117 ProSiteProfiles Protein kinase domain profile. 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59627g00001 117 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Trme59627g00001 117 MobiDBLite consensus disorder prediction 95 117 - -
Trme59627g00001 117 SUPERFAMILY Protein kinase-like (PK-like) 1 93 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59627g00001 Trme-Chr59627 419 772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59627g00001 1 89 Receptor kinase-like Gene Family AT4G02010 31.461 5.86e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme59627g00001 PK_Tyr_Ser-Thr 6.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59627g00001 - - adu:107483795 184.882