Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59587g00001 ATGGGAAGATCACCTTGTTGTGATAATAAAAATGGACTCAAAAAAGGTCCATGGACAAATGAAGAAGATAATATGCTTATCAACTACATTAATACTCATGGACCTGGAAATTGGCGCAACCTTCCCAAAAATGCTGGTCTTCAAAGGTGTGGCAAGAGTTGTCGGCTTCGATGGACGAATTACCTGAGACCTGATATCAAGAGAGGAAGATTTTCCTTTGAAGAAGAAGAGACTATCATTCAGCTCCATAGTGTCTTGGGAAACAA 266 0.3985 MGRSPCCDNKNGLKKGPWTNEEDNMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGN 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59587g00001 88 Gene3D - 12 68 - -
Trme59587g00001 88 SMART sant 14 64 IPR001005 -
Trme59587g00001 88 FunFam MYB-related transcription factor 14 67 - -
Trme59587g00001 88 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trme59587g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Trme59587g00001 88 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trme59587g00001 88 SUPERFAMILY Homeodomain-like 16 88 IPR009057 -
Trme59587g00001 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Trme59587g00001 88 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59587g00001 Trme-Chr59587 127 507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59587g00001 1 88 MYB Transcription Factor Family AT4G05100 87.500 3.79e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme59587g00001 Myb_DNA-binding 7.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59587g00001 K09422 - csv:101213017 176.407