Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59559g00001 ATGGCCACACGCTATGTTCCACATGCAAAGCACGAGTGCATAACCGGTGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGGCCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGCGATATTCCCTTCCTTGTTGCTCATTTGAGGGATGATCATAAGGTGGACATGCACACTGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTAGAGAATGCAACCTGGATGCTCACA 309 0.4369 MATRYVPHAKHECITGVPLVDKSLEILEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLT 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59559g00001 103 FunFam E3 ubiquitin-protein ligase SINAT3 26 69 - -
Trme59559g00001 103 ProSiteProfiles Zinc finger SIAH-type profile. 1 74 IPR013010 GO:0008270
Trme59559g00001 103 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 28 102 - -
Trme59559g00001 103 Pfam Seven in absentia protein family 28 103 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme59559g00001 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 69 IPR013083 -
Trme59559g00001 103 SUPERFAMILY TRAF domain-like 28 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59559g00001 Trme-Chr59559 390 769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59559g00001 17 103 C3H Transcription Factor Family AT2G41980 78.161 6.95e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59559g00001 K04506 - gmx:100810573 171.4