Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59554g00001 GATCTAAAACCTGAAAATTTGTTGCTTGATGAGAATGGTAATTTGAAAGTTTCTGATTTTGGTTTAAGTGCTGTTTCTGATCAAATTAGACAAGATGGTTTGTTTCATACTTTTTGTGGTACACCTGCTTATGTTGCTCCTGAGGTTTTGGCTAGGAAAGGTTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTACCTTTTCATGATCAAAATGTTATGGCAATGTATAAGAAGATTTATAAGGGTGATTTTAGGTGTCCTAGGTGGTTTTCGCCGGATTTGGCTAAACTCCTTATTCGTCTTCTTGATACGAAGCCTGAAACTAGGATTGCTATTCCTGATATAATGGAGAATAGGTGGTTTAAAAAAGGGTTCAAACAAATTAAGTTTTATGTTGAAGATGATAGGCTTTGTAATGTTGATGATAATAATTTTGCTGACATTGATGATGATACAGCTTCTATAGCATCTGTAGCGTCTGTGGCGTCTTTCTCTGATTATTCGATTTCGGAATCTGATTCTGAGGTTGAGACTAGAAGGAGAAATGCTCCTTTGCCAAGACCTGCTAGTTTGAATGCTTTTGACATTATATCGTTTTCTCCTGGTTTTGATCTTTCTGG 656 0.3628 DLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYKGDFRCPRWFSPDLAKLLIRLLDTKPETRIAIPDIMENRWFKKGFKQIKFYVEDDRLCNVDDNNFADIDDDTASIASVASVASFSDYSISESDSEVETRRRNAPLPRPASLNAFDIISFSPGFDLSG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59554g00001 219 SUPERFAMILY Protein kinase-like (PK-like) 1 188 IPR011009 -
Trme59554g00001 219 Gene3D Transferase(Phosphotransferase) domain 1 1 194 - -
Trme59554g00001 219 SMART serkin_6 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59554g00001 219 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59554g00001 219 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 219 - -
Trme59554g00001 219 Pfam Protein kinase domain 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59554g00001 219 FunFam Maternal embryonic leucine zipper kinase 1 179 - -
Trme59554g00001 219 Pfam NAF domain 200 219 IPR004041 GO:0007165
Trme59554g00001 219 ProSiteProfiles NAF domain profile. 198 219 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59554g00001 Trme-Chr59554 232 887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59554g00001 1 219 CBL-interacting serine-threonine protein kinases AT4G18700 75.455 1.55e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme59554g00001 Pkinase 4.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59554g00001 - - gmx:100790133 380.563