Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59544g00001 AATAGAATTGCTCCGGCGCACCATGGGTTAGAATTGGGAATTGGTGATGCTTCTATTATTAAGGCGCTCGCCGAGGTGTGTGGAAGGACCGAGCAACAGATTAAGGCCAATTATAAGAAAACAGGTGATTTGGGTTTAGTTGCACAAGCTAGCCGATCATCGCAGTCTATGTTGCGGAAACCCGAACCTTTGACTATTAGGAAGGTTTTTAACACATTTCATCTTATTGCAAAGTATTGTCCGGAAACAATGGAAGTTGGTGTTCCAATGCATAGGATAGACTTTTAA 288 0.4236 NRIAPAHHGLELGIGDASIIKALAEVCGRTEQQIKANYKKTGDLGLVAQASRSSQSMLRKPEPLTIRKVFNTFHLIAKYCPETMEVGVPMHRIDF 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59544g00001 95 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 1 79 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme59544g00001 95 Pfam DNA ligase N terminus 3 78 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme59544g00001 95 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 78 - -
Trme59544g00001 95 Gene3D - 1 85 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59544g00001 1 78 Core DNA Replication Machinery Family AT1G08130 61.538 5.04e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59544g00001 K10747 - tcc:18590967 128.642