Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59529g00001 ATGCATCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCAACTCATTTTCAGCCATCTCAAGGGCAACCTTTAACAAGTCGTGTAGTTACCTTGTGGTACCGGCCACCTGAACTTTTGCTTGGAGCTACGGATTATGGAGTTGCTGTGGATTTATGGAGTGCTGGTTGTATTCTTGCAGAACTACTTGCCGGGAAGCCTATAATGCCTGGACGAACTGAGAGAAAACTCCTTCACAGGAAAAGAATTCCATATGCTCTGTGA 300 0.4467 MHRDIKGSNLLLDNNGNLKIGDFGLATHFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELLAGKPIMPGRTERKLLHRKRIPYAL 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59529g00001 99 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Trme59529g00001 99 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59529g00001 99 Pfam Protein kinase domain 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59529g00001 99 PANTHER CELL DIVISION PROTEIN KINASE 1 92 - -
Trme59529g00001 99 SUPERFAMILY Protein kinase-like (PK-like) 1 92 IPR011009 -
Trme59529g00001 99 SMART serkin_6 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59529g00001 Trme-Chr59529 8 423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59529g00001 1 92 Core Cell Cycle Gene Families AT5G64960 66.304 6.59e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme59529g00001 Pkinase 5.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59529g00001 - - aprc:113851993 169.859