Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme595161g00001 ATGCAAGGTGGATTAGAGTTCCCACCTGGGTTCAGATTTCATCCTACTGATGATGAACTTGTGAATCACTACTTGTGTAGAAAGTGTGCTTCACTACCTATT 102 0.4118 MQGGLEFPPGFRFHPTDDELVNHYLCRKCASLPI 34
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme595161g00001 34 Pfam No apical meristem (NAM) protein 8 31 IPR003441 GO:0003677|GO:0006355
Trme595161g00001 34 SUPERFAMILY NAC domain 3 33 IPR036093 GO:0003677|GO:0006355
Trme595161g00001 34 ProSiteProfiles NAC domain profile. 7 34 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme595161g00001 Trme-Chr595161 1 102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme595161g00001 5 34 NAC Transcription Factor Family AT1G77450 83.333 1.19e-13 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme595161g00001 NAM 7.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme595161g00001 - - tcc:18611951 70.4774