Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59498g00001 CATTTAGCTGAAAATAGAAAGTCCGCAGTGAATGGAAAATTTGAGACTTTTCGAAATGGAGGATCTGAAGAAGTTAGGCATATATCTGGTGGTTATAATCTTAAAACCCTGAGTGGATTTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAACCATCTAATTGCCGATGAAGAATTCTTCTGCGATGCTTCGACTAAAAAAGTGGCATCTAATGAATCTTATGAGCAAGTAACCTTGATGGTCTGTGTTGAAGACACTGGAATTGGAATTCCTTTCCCGGCTCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCAACTTCTAGAAACTACGGTGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTCGAATTAATGGGTGGTCAGATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACCTTTTCATTTACTGCGGATTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGCTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGGTAAACCCGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAAGCGAAAGTCGCAAATGCCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTCGACCACAGG 683 0.4114 HLAENRKSAVNGKFETFRNGGSEEVRHISGGYNLKTLSGFEAADERNNWDNFNHLIADEEFFCDASTKKVASNESYEQVTLMVCVEDTGIGIPFPAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKLNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGSSTTG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59498g00001 228 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 73 220 - -
Trme59498g00001 228 ProSiteProfiles Histidine kinase domain profile. 81 156 IPR005467 -
Trme59498g00001 228 SMART HKATPase_4 47 156 IPR003594 -
Trme59498g00001 228 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 78 154 IPR003594 -
Trme59498g00001 228 PRINTS Bacterial sensor protein C-terminal signature 116 134 IPR004358 GO:0016310|GO:0016772
Trme59498g00001 228 PRINTS Bacterial sensor protein C-terminal signature 81 95 IPR004358 GO:0016310|GO:0016772
Trme59498g00001 228 PRINTS Bacterial sensor protein C-terminal signature 99 109 IPR004358 GO:0016310|GO:0016772
Trme59498g00001 228 PRINTS Bacterial sensor protein C-terminal signature 140 153 IPR004358 GO:0016310|GO:0016772
Trme59498g00001 228 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 76 180 IPR036890 -
Trme59498g00001 228 CDD HATPase_EvgS-ArcB-TorS-like 73 154 - -
Trme59498g00001 228 Gene3D - 34 159 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59498g00001 Trme-Chr59498 140 822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59498g00001 1 224 Histidine Kinase Gene Family AT2G01830 57.018 1.79e-73 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59498g00001 K14489 - gmx:100818481 374.785