Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59340g00001 ATGAATCAAAGAATGCCTATGATATATGTTAAACTTTATTCTTACCAGATTTGCAGAGCACTTGCTTATATTCACAACAGTATTGGAGTATGTCACAGGGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAACTGAAGATATGCGATTTTGGAAGTGCTAAAGTCTTGGTAAAGGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTATACCACAGCCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGG 317 0.388 MNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLG 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59340g00001 106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
Trme59340g00001 106 SMART serkin_6 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59340g00001 106 FunFam Mitogen-activated protein kinase 1 106 - -
Trme59340g00001 106 Pfam Protein kinase domain 5 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59340g00001 106 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Trme59340g00001 106 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 106 - -
Trme59340g00001 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59340g00001 106 SUPERFAMILY Protein kinase-like (PK-like) 3 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59340g00001 Trme-Chr59340 1 752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59340g00001 2 104 MAP Kinase Gene Family AT1G01560 46.602 6.83e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trme59340g00001 Pkinase 1.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59340g00001 K27413 - qsa:O6P43_007300 219.164