Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59281g00001 ATGAAGGTTACAGAGAAGTGCGACATATATAGTTACGGTGTTGTGCTCTTGGAATTGCTAACCGGAAAAACACCGGTTCAACCAATGGAGCAAGGAGGTGATCTTGTCACATGGACAAGAAACCATATTCGGAACAATAACAATACATTGAGCTCAGAGATGCTCGACAATCGTCTAGATCTCGAAGACCAAATAACTATAAATCACATGCTCACTGTTTTGAAACTTGCTTTAATGTGCACAAGTATGTCTCCTACTAAAAGACCATCAATGCGTGAAGTTGTGTTGATGCTCATCGAGTCAAATGAGCGAGAAGGAAACTTAACACTCACTCAAACAAACCACGGCCCTCCTTCCAAAGATAGCACATGA 372 0.414 MKVTEKCDIYSYGVVLLELLTGKTPVQPMEQGGDLVTWTRNHIRNNNNTLSSEMLDNRLDLEDQITINHMLTVLKLALMCTSMSPTKRPSMREVVLMLIESNEREGNLTLTQTNHGPPSKDST 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59281g00001 123 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme59281g00001 123 Pfam Protein tyrosine and serine/threonine kinase 2 96 IPR001245 GO:0004672|GO:0006468
Trme59281g00001 123 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 100 - -
Trme59281g00001 123 SUPERFAMILY Protein kinase-like (PK-like) 2 103 IPR011009 -
Trme59281g00001 123 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59281g00001 Trme-Chr59281 495 866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59281g00001 1 104 Receptor kinase-like Gene Family AT1G08590 42.857 5.13e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme59281g00001 PK_Tyr_Ser-Thr 8e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59281g00001 - - gmx:100805792 213.772