Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59273g00001 TATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCATTAACAATGGAAGGGAAGCAGTGACTAATTTTGAACCCAGTACATACCAAGGAGAGATGAAATCTGCAGCCATCAATGAAGGTGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCCACACCAGGACCTGGTCCCAAAGAAAATTCAGGGAAATTTCACTCCCCTTCTGTCCCTTACACAAGTTCAAGGGTATATATTTGA 270 0.4185 YIYLGLFDSEVEAARAYDKAAIINNGREAVTNFEPSTYQGEMKSAAINEGGSQNLDLNLGIATPGPGPKENSGKFHSPSVPYTSSRVYI 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59273g00001 89 MobiDBLite consensus disorder prediction 63 89 - -
Trme59273g00001 89 CDD AP2 1 36 IPR001471 GO:0003700|GO:0006355
Trme59273g00001 89 SUPERFAMILY DNA-binding domain 2 35 IPR016177 GO:0003677
Trme59273g00001 89 ProSiteProfiles AP2/ERF domain profile. 1 34 IPR001471 GO:0003700|GO:0006355
Trme59273g00001 89 SMART rav1_2 1 40 IPR001471 GO:0003700|GO:0006355
Trme59273g00001 89 Gene3D AP2/ERF domain 1 35 IPR036955 GO:0003700|GO:0006355
Trme59273g00001 89 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59273g00001 Trme-Chr59273 178 667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59273g00001 1 60 AP2-EREBP Transcription Factor Family AT4G36920 58.730 1.17e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59273g00001 K09284 - vvo:131595056 147.902