Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59253g00001 ATGTCATCAGAGGTTACTTTACGAGATGTGCCTCCGGAAGCTTTCAAGGCTATGCTTGACTTTTTTTATGATGGGCAATTGAATGAGGAAATTATTGATTCTGGCTCTTTGTTGCTCCAACTCCTTCTATTGGCTGATCGATTCGGAGTGACATTTCTTCACCAAGAATGCTGCAAAATGCTTTTAGAATGCCTCTCACAGGACTCCGTATGTCCACTCCTTCAGGTGGTTTCTTCAATCCCGTCATGCAGACTTGTTAAAGAAACACTGCAGAGGAGAATTTCCATGAACTTTGACTATTTTATCAGTGCCAGTACTGACTTTGTTTTGTTAGATGATACAACTTTCTTCAATATCATTAAG 363 0.3994 MSSEVTLRDVPPEAFKAMLDFFYDGQLNEEIIDSGSLLLQLLLLADRFGVTFLHQECCKMLLECLSQDSVCPLLQVVSSIPSCRLVKETLQRRISMNFDYFISASTDFVLLDDTTFFNIIK 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59253g00001 121 Pfam BTB/POZ domain 3 63 IPR000210 GO:0005515
Trme59253g00001 121 CDD BTB_POZ_ZBTB_KLHL-like 2 28 - -
Trme59253g00001 121 PANTHER OS05G0345500 PROTEIN 2 121 - -
Trme59253g00001 121 Gene3D Potassium Channel Kv1.1; Chain A 1 105 IPR011333 -
Trme59253g00001 121 SUPERFAMILY POZ domain 4 63 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59253g00001 Trme-Chr59253 117 823 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme59253g00001 BTB 1.2e-09 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59253g00001 - - cam:101499130 213.772