Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59168g00001 ATGCTCTTATCTCAATCTCTACTTCTGTGTTGGAAGGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTTGTTCTTACGTGGACAACAGTATTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGCGGTCATTGAATATGTTGGTATTCCCTGGTATTGATATGTTACAGAAGCTTCTAGCGGAGCAAGGAAAACTTGAGGCAGATGCCGAGCAATTTGAGAATGAAGATGTTTCAATCAAGCCCACTCTGGTCAATAGGTTAGATATCAATTCATCGGCCTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCCTGCCAATAAGATTAACAATGAAAGCAGTGATGCTTCTCAAGATGCAAGCAATCAAGGTTTGACTGGTAGGACTGTGTGCTCCAAATCTCATTCCGAGGAAAAATCATCTGAGGATGCTAGTTCCAATCCAGCTAACAAGATTAAGAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGGTTTG 540 0.413 MLLSQSLLLCWKALCSLKVEKLVIPAISELVLTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLAEQGKLEADAEQFENEDVSIKPTLVNRLDINSSALQDPHGSEDASSNPANKINNESSDASQDASNQGLTGRTVCSKSHSEEKSSEDASSNPANKIKNESSDASQDTSNQGL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59168g00001 180 Coils Coil 65 85 - -
Trme59168g00001 180 MobiDBLite consensus disorder prediction 100 180 - -
Trme59168g00001 180 MobiDBLite consensus disorder prediction 157 180 - -
Trme59168g00001 180 PANTHER PHD FINGER PROTEIN 12 12 171 IPR042163 GO:0003714|GO:0045892
Trme59168g00001 180 MobiDBLite consensus disorder prediction 100 143 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59168g00001 13 79 PHD Transcription Factor Family AT1G05380 62.687 9.97e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59168g00001 - - mtr:25485216 229.565