Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59138g00001 CAACTAAAGGCTTTGTGCGGAAGCCGTGAATGGGTTGGTCCAGGGAGTAGGATAATAATCACAACAAGAGATATGCATCTTCTTGCATACTGTGGAGTTGATCAAGTGTATAGAATTGAAGAAATGATCGAAGGTGAATCTCTTGAGCTTTTCAGTTGGCATGCATTCAAGCAATCAAGTCCGAGAAAAGATTTTGCTATGCATTCAACAAATGTGATTGCCTATTCTGGGGGATTGCCACTAGCACTTGAAGTACTTGGGTGCTATTTGTATGACTGTGAAATAATAGTGTGGCAGGAAGTTTTGGAAAAACTCAAATGTATTCCCCACCATCAAGTGCAGAAGAAGTTGATCGTAAGCTTTGATGGTTTAAAAGATGTTACAGAGAGACAAACATTCCTTGATATAGCTTGTTTCTTTATTGGAATGGATCGAAATGATGTAATACACATATTAAATGGGTGTGGATTTTTTGCTGATATTGGAATTAAAGTTCTTGTAGAGCGAAGTCTTGTAACGGTTGATGATAAGAACAAGCTTCAAATGCATGATTTGTTAAGAGACATGGGAAGACATATAATTTATGAAGAATCACCTTTTGATCCTGAGAAGCGTAGTAGGTTGTGGCGCCGTGAGGAAGTGTTTGATATATTATCAAAGCATACGGTAATTACTAATTGA 681 0.3759 QLKALCGSREWVGPGSRIIITTRDMHLLAYCGVDQVYRIEEMIEGESLELFSWHAFKQSSPRKDFAMHSTNVIAYSGGLPLALEVLGCYLYDCEIIVWQEVLEKLKCIPHHQVQKKLIVSFDGLKDVTERQTFLDIACFFIGMDRNDVIHILNGCGFFADIGIKVLVERSLVTVDDKNKLQMHDLLRDMGRHIIYEESPFDPEKRSRLWRREEVFDILSKHTVITN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59138g00001 226 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 217 IPR044974 GO:0006952
Trme59138g00001 226 SUPERFAMILY "Winged helix" DNA-binding domain 113 218 IPR036390 -
Trme59138g00001 226 Gene3D - 42 130 IPR042197 -
Trme59138g00001 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 136 IPR027417 -
Trme59138g00001 226 Pfam NB-ARC domain 15 106 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59138g00001 Trme-Chr59138 139 819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59138g00001 2 209 WRKY Transcription Factor Family AT5G45050 39.713 8.04e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59138g00001 - - vvo:131601411 371.703