Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59112g00001 ATATGCAAGGTTGTTGACAGGGCGGAGTTTGAGGAGGTGAACAAAGAGGTATTTGAAAAGTGTGAAAGCCTTATCATCCAGTGTTTACATGATGCAAAGGTAGAAGTTGAGGACGTAAATGATGTGATAGTTGTTGGTGGATGTTCTTATATACCAAGGGTGAAGAATCTTGTTACCAAAATATGCAAAGTAACAGAAGTTTATAAAGGTATAAATCCTTTGGAAGGTGCGGTTTGTGGTGCAGCAATGGAAGGAGCTGTTGCTTCAGGCATTATTGATCCCTTTGGAAATTTGGACTTGTTAACCATTCAAGCCACTCCTCTTGCCATTGGAATTCGAGCTGATGGAAACAAGTTTGTCCCTGTAATTCCGAGGAACACGACAATGCCAGCGCGTAAGGATCTACTTTTTACAACCATTCATGATAATCAAACTGAGGCATTGATACTTGTGTACGAAGGTGAGGGAAATAAGGCAGAAGAAAACCACTTGTTGGGATATTTCAAGATAATGGGAATACCTGCAGCACCCAAAGGAGTTCCTGAAATCAATGTGTGCATGGACATAGATGCTGCAAACGTGCTGAGAGTTTTAGCTGGTGTCGTGATGCCTGGATCTCGTACACCTGCAGTTCCTGTTATGGAAGTGCGGATGCCGATGGTTGATGATGGCCATGGTTGGTGTGCTGAGGCCCTAAATAGAACCTATGGTGCCACAATGGATTTGGTTACCCTCAAGAAGGCATGA 747 0.4324 ICKVVDRAEFEEVNKEVFEKCESLIIQCLHDAKVEVEDVNDVIVVGGCSYIPRVKNLVTKICKVTEVYKGINPLEGAVCGAAMEGAVASGIIDPFGNLDLLTIQATPLAIGIRADGNKFVPVIPRNTTMPARKDLLFTTIHDNQTEALILVYEGEGNKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAANVLRVLAGVVMPGSRTPAVPVMEVRMPMVDDGHGWCAEALNRTYGATMDLVTLKKA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59112g00001 248 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 96 211 IPR029047 -
Trme59112g00001 248 PANTHER HEAT SHOCK PROTEIN 70KDA 5 199 IPR013126 GO:0005524|GO:0140662
Trme59112g00001 248 FunFam Heat shock 70 kDa protein 8 94 209 - -
Trme59112g00001 248 SUPERFAMILY Actin-like ATPase domain 4 89 IPR043129 -
Trme59112g00001 248 Gene3D Actin; Chain A, domain 4 4 20 - -
Trme59112g00001 248 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 101 206 IPR029047 -
Trme59112g00001 248 Pfam Hsp70 protein 5 199 IPR013126 GO:0005524|GO:0140662
Trme59112g00001 248 Gene3D - 21 68 - -
Trme59112g00001 248 PRINTS 70kDa heat shock protein signature 99 118 - -
Trme59112g00001 248 PRINTS 70kDa heat shock protein signature 71 91 - -
Trme59112g00001 248 PRINTS 70kDa heat shock protein signature 39 55 - -
Trme59112g00001 248 PRINTS 70kDa heat shock protein signature 180 196 - -
Trme59112g00001 248 Gene3D - 69 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59112g00001 Trme-Chr59112 3 749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59112g00001 4 207 Calmodulin-binding Proteins AT3G12580 43.478 8.60e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59112g00001 K09489 - gmx:100809773 438.343