Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5901g00001 TATTCAGTTACTACAACTGATTTTGTTGCTAACCAAGGAAATTCAGTTTCTCTTGATTCTACTAACATTGATGATGATAATAAAGGTGATGATAGTGGTGGTAGTGGTGGTGGTGGTTTTGTTCTTAAGCCTCCTCCTAAGCCTGTTTTGAAGTCCTCTAGTGATGATGTGGATGAGAGGACTAAGGTGATTGAATCACTTGGAGAGGTTTTGGAGAAGGCTGAAAAGCTTGAAAATCCTAAGTTGGATGGTGAAAGAAGTAACGGTTCGGTAAGTAAACCGGAAAGACCGGAGACAAATGTTAAAGCGGAGATAAATGTTAAACCTAAGGATGATAATCCGGTAAATTCGTTACAAAAACATAAGTCTAAGACATTGAAGAGTATATGGCGTAAAGGGGACTCGGTTGGAAGTGTGCAGAAAGTTGTGAAGGAAGTACATAAGCCTAGTATCAAGAGAAGTGAAGTGGGGGAATCACAGATAGTGGGAGGGGAGAAGGTAACAACTCAGTCTAGTGATCCTCAGCCTCCTTCGAGACCTCAACCGACATTACTGTCTAGGCCTTCTATAGCCCCGCCACCCCCACCACCCCCGCCATTCGTTAAAAAGCCTGTTATCTTGAAGGATGATAGAGGGCAAGGTGAAACACCTGTTAAAAAGACTGTTATCTTGAAGGATGATAAAGGGGAAGTTGTAAAAGGGGAAATTGAAACACCTGTTACGTCTAAAGAAAGGAAGGGACCTATCTTGATCGATAAGTTTGCTACAAAGAAACCGGAAGTTGACCCTGTGATTGCTCGATCTGTTATGGCTCCTCCGAAACCAGGGAAGGCCCCTCCCCAAGGAAGGTTTAAAGATGATTACCGGAAGAAAGGTGCTTCATCAGGTGCAGGACCAAGAAGACGAATGGCGGTGAATGATGATGATAGTCCCAGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGTAAGGCGGTACGACTTCAGGTTGCCAGGGAAGCTGCTCCTGTAAAAGTTGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTGGCATACAATTTGGCAACCACTGAAGGTGAAATCCTCGGTTCTCTGTACTCCAAAGGAATTAAACCAGATGGGGTGCAAACTCTTGACAAGGATATGGTGAAGATGATTTGTAAAGAATATGATGTGGAAGTCATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACCTCGACAAACTCAAAGACAGACCTCCTGTTATTACTATCATGGGCCATGTAGATCACGGCAAAACAACTCTGTTGGATCATATAAGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGAAAAACGTTGCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNAAAAAAAACTCATTTCTAACTTATTTCCTTATAAATATGCATAACTGCTTGTACATTTCACTCTGCCGAACCCTATTGGGACCTTAA 1581 0.4162 YSVTTTDFVANQGNSVSLDSTNIDDDNKGDDSGGSGGGGFVLKPPPKPVLKSSSDDVDERTKVIESLGEVLEKAEKLENPKLDGERSNGSVSKPERPETNVKAEINVKPKDDNPVNSLQKHKSKTLKSIWRKGDSVGSVQKVVKEVHKPSIKRSEVGESQIVGGEKVTTQSSDPQPPSRPQPTLLSRPSIAPPPPPPPPFVKKPVILKDDRGQGETPVKKTVILKDDKGEVVKGEIETPVTSKERKGPILIDKFATKKPEVDPVIARSVMAPPKPGKAPPQGRFKDDYRKKGASSGAGPRRRMAVNDDDSPSATRKGRKWSKASRKAVRLQVAREAAPVKVEILEVSDKGMLVEELAYNLATTEGEILGSLYSKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPFKVEGLVNRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPXXXXXXXXXXXXXXXXKKNSFLTYFLINMHNCLYISLCRTLLGP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5901g00001 526 MobiDBLite consensus disorder prediction 52 118 - -
Trme5901g00001 526 MobiDBLite consensus disorder prediction 175 203 - -
Trme5901g00001 526 MobiDBLite consensus disorder prediction 265 321 - -
Trme5901g00001 526 MobiDBLite consensus disorder prediction 280 294 - -
Trme5901g00001 526 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 111 477 IPR015760 -
Trme5901g00001 526 Gene3D - 425 481 IPR027417 -
Trme5901g00001 526 MobiDBLite consensus disorder prediction 13 222 - -
Trme5901g00001 526 MobiDBLite consensus disorder prediction 302 316 - -
Trme5901g00001 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 474 IPR027417 -
Trme5901g00001 526 MobiDBLite consensus disorder prediction 204 222 - -
Trme5901g00001 526 Pfam Translation initiation factor IF-2, N-terminal region 351 399 IPR006847 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5901g00001 Trme-Chr5901 118 1885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5901g00001 429 469 Eukaryotic Initiation Factors Gene Family AT1G21160 68.293 1.35e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5901g00001 K02519 - gmx:100818840 546.199