Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme59011g00001 ATGCCATGCAAACACATATACCATGATGAATGCATACTTCCATGGCTTGCAATTAAAAATTCTTGTCCGGTATGTCGCCATGAACTTCCTTGTGAATCACAACAAAATAACAATAATCAAAATTTAGAAGATAATGTTGGGTTGACAATTTATCGGTTACCGGGTGGAGGGTTTGCCGTGGGAAGATTCTCTGGTGGAAGAAATGGCGTTGAGGGCGGGGATGAAAGTGAAAGAGAGCTTCCTATTGTTTACACGGAGATGGATGGTGCATTTAACAATATTAGTGAACCAAGGAGGATTTCATGGTCATTAACATCATCTAGAGGAAGGAGAGAAAGAAGTAGTGGGGGTGGATTTCGTAGAATGATGAACAATTTGTTTGGATGTTTGGGAGGTGGGGGTGCAGTTAGCAATAATCAACGTTATGTTCCTACTACTAGAGAGTTTTCTGAATCTATGCCCATGAGAAATAATANNNNNNNTNNNNNNNNNNTNNNNNNNNNNACACGTCAACGTAGAACTTGGTCTATGGATGTAAATGGTGGAATTAGACCATGGTAA 561 0.3815 MPCKHIYHDECILPWLAIKNSCPVCRHELPCESQQNNNNQNLEDNVGLTIYRLPGGGFAVGRFSGGRNGVEGGDESERELPIVYTEMDGAFNNISEPRRISWSLTSSRGRRERSSGGGFRRMMNNLFGCLGGGGAVSNNQRYVPTTREFSESMPMRNNXXXXXXXXXXTRQRRTWSMDVNGGIRPW 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme59011g00001 186 ProSiteProfiles Zinc finger RING-type profile. 1 26 IPR001841 -
Trme59011g00001 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 30 - -
Trme59011g00001 186 Pfam Ring finger domain 2 26 IPR001841 -
Trme59011g00001 186 Pfam Protein of unknown function (DUF1117) 46 141 IPR010543 -
Trme59011g00001 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 48 IPR013083 -
Trme59011g00001 186 SUPERFAMILY RING/U-box 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme59011g00001 Trme-Chr59011 289 849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme59011g00001 1 35 C3H Transcription Factor Family AT5G15820 65.714 1.81e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme59011g00001 K11982 - gmx:100807324 184.882