Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5896g00001 GAACTTTACAGCAATAACATCACTGGTCCTATTCCAAGTGACTTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACTTAAATCGGTTCACTGGCCCTATCCCGGCTTCACTGGGCAAGTTGTCAAAATTGCGATTCCTCTTGATGGGTCCTATTCCGATGTCACTGACTAATATTACAGCTCTCCAAGTTCTGGATTTGTCTAATAACCAGCTCTCAGGCGTGGTTCCCGATAATGGCTCCTTCTCATTGTTCACTCCGATTAGTTTTGCAAACAACTTGAATCTATGTGGACCAGTCACTGGCCACCCTTGTCCAGGCTCTCCTCCGTTTTCTCCGCCTCCCCCATTTGTCCCCCCACCACCAATCTCTGCCCCAGGAAGTGGCAGTGCAACTGGAGCAATAGCTGGAGGAGTTGCTGGCGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTTCCTGCTGAAGAGGATCCCGAAGTTCATCTTGGGCAGCTTAAGAGATTCTCACTGAGAGAGTTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGAGGAGGGTTTGGTAAGGTGTACAAAGGACGATTGGCAGACGGTTCACTGGTTGCTGTCAAAAGATTGAAAGAGGAGCGGACACCGGGTGGGGAGCTTCAGTTTCAGACTGAAGTTGAGATGATCAGCATGGCTGTTCATAGAAATCTCCTCCGTTTACGTGGGTTTTGTATGACTCCAACAGAAAGGTTACTTGTTTATCCGTACATGGCTAATGGAAGTGTTGCCTCTTGTTTAAGAGAGCGTCCTCCACATCAGGAACCACTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCACGATCATTGTGACCCAAAGATCATTCATCGTGACGT 977 0.4678 ELYSNNITGPIPSDLGNLTNLVSLDLYLNRFTGPIPASLGKLSKLRFLLMGPIPMSLTNITALQVLDLSNNQLSGVVPDNGSFSLFTPISFANNLNLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGSGSATGAIAGGVAGGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5896g00001 326 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 326 - -
Trme5896g00001 326 Gene3D Transferase(Phosphotransferase) domain 1 275 326 - -
Trme5896g00001 326 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
Trme5896g00001 326 Pfam Protein kinase domain 199 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5896g00001 326 ProSiteProfiles Protein kinase domain profile. 198 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5896g00001 326 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524
Trme5896g00001 326 SUPERFAMILY L domain-like 2 94 - -
Trme5896g00001 326 SUPERFAMILY Protein kinase-like (PK-like) 177 326 IPR011009 -
Trme5896g00001 326 FunFam Somatic embryogenesis receptor kinase 1 167 274 - -
Trme5896g00001 326 Gene3D Phosphorylase Kinase; domain 1 167 274 - -
Trme5896g00001 326 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5896g00001 Trme-Chr5896 1 1641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5896g00001 1 326 Receptor kinase-like Gene Family AT1G71830 89.458 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme5896g00001 Pkinase 4.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5896g00001 K13418 - gmx:100789884 552.747