Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme58921g00001 ATGATCCCTTGTCGTCGAATAGCGTCTAAGATTCAAGTTATCAAGTCATCTGTACGTGAGATCAAGGAAAGAAGTGAAAGATATGGCTTTCAAATCCAGCCTTCTATTGAACAAGGATCAAGCAGCTTCAGAGGAAGCCAAAAAGCCAAATGGCACGACCCTCRAATGGCTGCTTTATACATTGATGAAGCTGAAATTGTAGGCTTTCAAGTACCCAAAAATATATTGATTAGTTGGTTGGTAGAAGGAAGAGCAGAGCGCACTGTCATCTCTGTGGTAGGAATGGGAGGGCAAGGAAAAACCACTCTGGCCAAAAATGTTTTTAACAGCAAAGAGGTCGTGGGACACTTTGAATGCCGTGTGTGGATCACAGTGTCACAATCATACAATATAGATGGGTTGCTGAGAGGTATGTTGAAGGAGGTTTACAAACAAAAAGAGGACTGTCCTCCTCAAGATATCTCGGAAATGGATCAAGGGTCATTGATTTCTGAGTTGAGAAACTACTTGCAGCAAAAGAGGTATGTTTTCGTGTTTGATGATGTATGGAACATAAGTTTTTGGGATGAAATTGAATGTATTGTGAGTGATAATAAAAATGGGAGCAAGATATTTATTACAACAAGAAATATGGATGTTGCCGTGTATTGTAAGAAATCTTCTTTTATTGAAGTGCATGAAATGCAATCTTTAACAGAAGAACAATCTTTCGAGTTGTTCACTAAGAAAGCTTTCCGGTTTGATTTTGATGGATGTTGTCCAAAAGATCTGATTAATATATCTTTTGAAATTGCTAGAAAATGCAAGGGTTTGCCATTGGCAATTGTGGCCATTGGTGGTCTTTTATCTACAAA 854 0.3829 MIPCRRIASKIQVIKSSVREIKERSERYGFQIQPSIEQGSSSFRGSQKAKWHDPXMAALYIDEAEIVGFQVPKNILISWLVEGRAERTVISVVGMGGQGKTTLAKNVFNSKEVVGHFECRVWITVSQSYNIDGLLRGMLKEVYKQKEDCPPQDISEMDQGSLISELRNYLQQKRYVFVFDDVWNISFWDEIECIVSDNKNGSKIFITTRNMDVAVYCKKSSFIEVHEMQSLTEEQSFELFTKKAFRFDFDGCCPKDLINISFEIARKCKGLPLAIVAIGGLLST 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme58921g00001 284 Pfam NB-ARC domain 74 284 IPR002182 GO:0043531
Trme58921g00001 284 Gene3D - 230 284 IPR042197 -
Trme58921g00001 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 284 IPR027417 -
Trme58921g00001 284 FunFam Probable disease resistance protein At1g61300 52 221 - -
Trme58921g00001 284 Gene3D - 59 225 IPR027417 -
Trme58921g00001 284 PRINTS Disease resistance protein signature 268 282 - -
Trme58921g00001 284 PRINTS Disease resistance protein signature 89 104 - -
Trme58921g00001 284 PRINTS Disease resistance protein signature 169 183 - -
Trme58921g00001 284 PANTHER DISEASE RESISTANCE PROTEIN RP 15 283 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme58921g00001 Trme-Chr58921 1 854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme58921g00001 90 279 WRKY Transcription Factor Family AT5G45050 25.263 8.26e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme58921g00001 K13457 - mtr:25489074 467.618