Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5885g00001 GGGACTACAGCAGTTACCTTGATCAAGCAGGGCCCGGATCTTGTTGTCGGTAATGTGGGGGATTCAAGAGCTGTATTGGGAACCCGAGATCATGACGATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCTAATCTTCCAAAGGAAGAAGAGAGGATTAAGCTTCGTAAAGGAAGGGTTTTTTCCTTGAAGAATGAACCGGATGTGGCTAGAGTTTGGCTGCCTAACTCTGATTTCCCAGGTCTGGCTATGGCACGGGCTTTTGGAGATTTTTGCCTGAAGGACGTTGGATTGATTTCTGTTCCAGATGTTTCATATCGCCGCCTTACAGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGGTAAGGCACATGATATCATATCTGTAG 399 0.4536 GTTAVTLIKQGPDLVVGNVGDSRAVLGTRDHDDSLIAVQLTIDLKPNLPKEEERIKLRKGRVFSLKNEPDVARVWLPNSDFPGLAMARAFGDFCLKDVGLISVPDVSYRRLTEKDEFVVLATDGVRHMISYL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5885g00001 132 Gene3D - 1 131 IPR036457 -
Trme5885g00001 132 SUPERFAMILY PP2C-like 1 130 IPR036457 -
Trme5885g00001 132 Pfam Protein phosphatase 2C 1 129 IPR001932 -
Trme5885g00001 132 CDD PP2Cc 1 125 IPR001932 -
Trme5885g00001 132 ProSiteProfiles PPM-type phosphatase domain profile. 1 132 IPR001932 -
Trme5885g00001 132 PANTHER PROTEIN PHOSPHATASE 1 129 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5885g00001 Trme-Chr5885 308 1393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5885g00001 1 130 PP2C-type Phosphatase Gene Family AT1G79630 75.385 1.07e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5885g00001 - - gmx:100810538 233.032