Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme588051g00001 ATGAGGATTATGATAAAGGGAGGTGTTTGGAAAAACACCGAGGATGAAATTCTGAAAGCTGCTGTTATGAAATACGGTAAAAATCAATGGGCTCGTATATCGTCGCTTCTTGTCCGTAAATCTGCGAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAAACCGAATGGACTAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCCATTGTTGG 266 0.4098 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVG 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme588051g00001 89 Gene3D - 58 88 - -
Trme588051g00001 89 Pfam Myb-like DNA-binding domain 10 70 - -
Trme588051g00001 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 89 IPR017930 -
Trme588051g00001 89 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Trme588051g00001 89 ProSiteProfiles Myb-like domain profile. 54 89 IPR001005 -
Trme588051g00001 89 SUPERFAMILY Homeodomain-like 6 87 IPR009057 -
Trme588051g00001 89 CDD SANT 10 53 IPR001005 -
Trme588051g00001 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Trme588051g00001 89 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 89 IPR047242 GO:0000398|GO:0000974
Trme588051g00001 89 FunFam CDC5 cell division cycle 5-like 5 59 - -
Trme588051g00001 89 SMART sant 58 89 IPR001005 -
Trme588051g00001 89 SMART sant 6 55 IPR001005 -
Trme588051g00001 89 Gene3D - 5 57 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme588051g00001 1 89 MYB-Related Transcription Factor Family AT1G09770 98.876 1.38e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme588051g00001 Myb_DNA-bind_6 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme588051g00001 K12860 - han:110872956 188.348