Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme58778g00001 TTGAAATCAAAACATCAAGCATTTAGCTACACAGAAATTCTTAATATCACTGATAACTTCAAAACCATTATTGGAGAAGGAGGATTTGGAAAGGTTTATGTTGGCATTCTACAAGATCACACTCAAGTTGCTGTTAAGTTGCTTTCACCATCGTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAACGGTTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGGTGAAATCAAAGCATTGATTTATGAGTACATGGTCAATGGAAATCTCCAACAACTTCTATCAGTGGTGTTGGCTTGGGACCTTGGAGTGTACTCCTCTCAAGGTATCAGGTTCGATTTCTTCTAG 375 0.3733 MKSKHQAFSYTEILNITDNFKTIIGEGGFGKVYVGILQDHTQVAVKLLSPSSMQGYKEFQSEAQLLTVVHHRNLVSLIGYCDEGEIKALIYEYMVNGNLQQLLSVVLAWDLGVYSSQGIRFDFF 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme58778g00001 124 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Trme58778g00001 124 FunFam Leucine-rich repeat receptor-like protein kinase 1 93 - -
Trme58778g00001 124 Pfam Protein tyrosine and serine/threonine kinase 20 104 IPR001245 GO:0004672|GO:0006468
Trme58778g00001 124 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Trme58778g00001 124 SUPERFAMILY Protein kinase-like (PK-like) 6 105 IPR011009 -
Trme58778g00001 124 ProSiteProfiles Protein kinase domain profile. 18 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme58778g00001 124 PANTHER OS07G0107800 PROTEIN-RELATED 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme58778g00001 Trme-Chr58778 2 644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme58778g00001 1 110 Receptor kinase-like Gene Family AT5G16900 58.261 8.22e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme58778g00001 PK_Tyr_Ser-Thr 3.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme58778g00001 - - tpra:123886800 194.897