Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme58640g00001 ATGACAGTAAGGAGAGAAATAATGCAGTCATTTATGGTCGGAGAGTTCCCGGTGATTGTGGCTACCGGAGTTTTGGGTAGAGGGGTTGATTTATTAGGCGTAAGACAAGTGATTGTGTTCGACATGCCGAATTCCATTAAGGAATATGTACATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGACGAGAATAGGAATGTTTTTGCAGAGTTAGTTGATGTACTAAAGTCGGGTGCAGCGGCTATACCTCGGGAACTTATCAATTCACAGTATACCACAGGATTTGTCTCTGGTGGCAAAGGTTCAAAGAAGAGAAAGCACAGATGA 354 0.4266 MTVRREIMQSFMVGEFPVIVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENRNVFAELVDVLKSGAAAIPRELINSQYTTGFVSGGKGSKKRKHR 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme58640g00001 117 Gene3D - 1 102 IPR027417 -
Trme58640g00001 117 SMART helicmild6 1 60 IPR001650 -
Trme58640g00001 117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 99 IPR001650 -
Trme58640g00001 117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 97 IPR027417 -
Trme58640g00001 117 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 3 98 - -
Trme58640g00001 117 Pfam Helicase conserved C-terminal domain 4 60 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme58640g00001 Trme-Chr58640 478 831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme58640g00001 9 100 Eukaryotic Initiation Factors Gene Family AT5G11170 35.484 2.85e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme58640g00001 K19466 - gmx:100784491 166.007