Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5859g00001 TATTTTCTTAAGACAGGAACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCACCCGTAGTATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCCTGCCCTTATTACATGAGAACCGGATCTTGTAAGTTTGGAGTTGCATGCAAGTTCCATCATCCACAACAGCAGGCTTCCTTTGGAGCTTATCCGGTGGCTGCGTCCCCTCCCTCAACAACTGTTACTTCATCCGGTTTTCCATATGCTGGCGGGTTTCCTGCATGGTCAGTGCCGAGAATGTCGTATTTATCTGGGCAGGCCATTCAATCTTATGTGCCTCCTTTTATGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAATGCCTTCTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGGAGAGACACTTTCTGGGGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGATCAACCAGACTGTAAATACTTTATGAGCACCGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGCCCAAACTTTATCGGTTAATCCACTTGGCCTTCCTATGAGACCT 663 0.4555 YFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQQASFGAYPVAASPPSTTVTSSGFPYAGGFPAWSVPRMSYLSGQAIQSYVPPFMPSSQGIMPALSWSNYMGSISPAMPSGFIGSNLVYDYMNPAGETLSGGQVMNSTLPDRPDQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSVNPLGLPMRP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5859g00001 221 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Trme5859g00001 221 SMART c3hfinal6 1 20 IPR000571 GO:0046872
Trme5859g00001 221 SMART c3hfinal6 176 203 IPR000571 GO:0046872
Trme5859g00001 221 SMART c3hfinal6 40 65 IPR000571 GO:0046872
Trme5859g00001 221 SUPERFAMILY CCCH zinc finger 180 205 IPR036855 GO:0046872
Trme5859g00001 221 SUPERFAMILY CCCH zinc finger 37 67 IPR036855 GO:0046872
Trme5859g00001 221 Gene3D - 1 76 - -
Trme5859g00001 221 PANTHER PROTEIN PHOSPHATASE RELATED 1 221 - -
Trme5859g00001 221 Gene3D - 168 214 - -
Trme5859g00001 221 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 42 65 IPR000571 GO:0046872
Trme5859g00001 221 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1 20 IPR000571 GO:0046872
Trme5859g00001 221 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 203 IPR000571 GO:0046872
Trme5859g00001 221 ProSiteProfiles Zinc finger C3H1-type profile. 1 21 IPR000571 GO:0046872
Trme5859g00001 221 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5859g00001 Trme-Chr5859 989 2039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5859g00001 1 221 C3H Transcription Factor Family AT1G04990 45.852 1.91e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme5859g00001 zf-CCCH 4.8e-11 CL0537