Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme58570g00001 CCAGATGAGGATGGTTCTATACCTAGACAGCAATTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTTGAGAATAACGCTATCCTTGATGTTATTGGGGTTGTGACATATGTGAGTCCTACAGTTCCCATCTTAAGGAAGAACGGAATGGAAACACAGAGAAGGATTTTGAATCTAAAGGACAATTCTGGCAGGAGTGTTGAGCTAACACTGTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTAGATGCTGGGGTTTTCCCCATTTTAGCAGTAAAGGCGGGGAAGGTTAATGAATTCAGTGGRAARTCTATAGGCTCTATTTCTACTACTCAGCTTTTCATAAATCCAGATTTCCCTGAGGCTCAGAGCTTAAGAAACTGGTTTGATCAAGTCGGAAAAGATTCTGCTTCTCTATCCGTTTCTAAGGACATTACTCATGGAGGACCTAAGAATGAGATACGCAAAACTGTGTCTCAAATCAAAGATGAAGGTCTGGGGAGGTCAGACAAACCAGACTGGATAACATTGAGGGCAGCCATATCATTCATTAAGACTGATACATTTTGTTACACGGGTTGCCCTCTGATGATTGGAGATCGGCAGTGCAATAAGAAAGTGATAAGGTCAGGAGACACAAGATGGCAGTGTGATAGATGCAACCAGGAGTTTGAGGAATGCGACTATCGATACCTTCTCCAAGCTCAAATCCTGGATAATACTGGATTAACTTGGGTTACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTACTCAGCAAAAGATCT 806 0.4305 PDEDGSIPRQQFSFRPISDIENVENNAILDVIGVVTYVSPTVPILRKNGMETQRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRNWFDQVGKDSASLSVSKDITHGGPKNEIRKTVSQIKDEGLGRSDKPDWITLRAAISFIKTDTFCYTGCPLMIGDRQCNKKVIRSGDTRWQCDRCNQEFEECDYRYLLQAQILDNTGLTWVTAFQEAGEEIMGYSAKDL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme58570g00001 269 CDD RPA1_DBD_C 163 269 IPR047192 -
Trme58570g00001 269 SUPERFAMILY Nucleic acid-binding proteins 11 138 IPR012340 -
Trme58570g00001 269 SUPERFAMILY Nucleic acid-binding proteins 160 269 IPR012340 -
Trme58570g00001 269 Gene3D - 6 145 IPR012340 -
Trme58570g00001 269 FunFam Replication protein A subunit 145 269 - -
Trme58570g00001 269 CDD RPA1_DBD_B 28 135 - -
Trme58570g00001 269 Pfam Replication factor-A C terminal domain 179 269 IPR013955 -
Trme58570g00001 269 FunFam Replication protein A subunit 6 144 - -
Trme58570g00001 269 PANTHER REPLICATION FACTOR A 1, RFA1 11 268 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme58570g00001 269 Gene3D - 146 269 IPR012340 -
Trme58570g00001 269 Pfam Replication protein A OB domain 17 121 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme58570g00001 Trme-Chr58570 88 893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme58570g00001 1 269 Core DNA Replication Machinery Family AT2G06510 76.667 8.84e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme58570g00001 K07466 - gmx:100792409 486.493