Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5856g00001 ATGGCTGGCATAGCATTTGGAAGGTTTGATGATTCTTTCAGCTTTGGGTCAATTAAGGCCTATATTGCTGAATTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATGGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCAGCTGGTTTACTAGCAGTTGCTGTTTGCCATGGTTTTGCATTATTTGTTGCT 210 0.419 MAGIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAMAYGKLTSDAALDPAGLLAVAVCHGFALFVA 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5856g00001 70 PRINTS Major intrinsic protein family signature 63 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme5856g00001 70 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme5856g00001 70 SUPERFAMILY Aquaporin-like 13 69 IPR023271 -
Trme5856g00001 70 Gene3D Glycerol uptake facilitator protein. 2 70 IPR023271 -
Trme5856g00001 70 PANTHER AQUAPORIN-8 4 70 IPR034294 -
Trme5856g00001 70 Pfam Major intrinsic protein 16 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5856g00001 1 70 Major Intrinsic Protein MIP AT3G16240 81.429 1.05e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5856g00001 K09873 - qsa:O6P43_027737 125.561