Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme58541g00001 CGATTCTTACAATATAGAGATCCTCGAGCTCAGAGGCGACACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTCAACAGACTGAGACTTACACCGATTCATGACGATGATGGAATTGTGACACACGTAATAGGTATCCAAATATTTTCCGAGGCAAACATAGATCTTAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAGAGTGGAAAGTTATTGTACAGTCCGCAGCAGCGTGAAGAGATGTGCGGCATTCTTCAGCTTTCTGATGAAGTCTT 392 0.4133 RFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGIVTHVIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYSPQQREEMCGILQLSDEV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme58541g00001 130 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 130 - -
Trme58541g00001 130 SMART pac_2 36 77 IPR001610 -
Trme58541g00001 130 SUPERFAMILY PYP-like sensor domain (PAS domain) 11 72 IPR035965 -
Trme58541g00001 130 Gene3D PAS domain 1 83 - -
Trme58541g00001 130 Pfam PAS domain 18 72 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme58541g00001 Trme-Chr58541 1 392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme58541g00001 15 73 AGC Kinase Gene Family AT5G58140 45.763 7.18e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme58541g00001 K12116 - gmx:100301889 236.113