Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5832g00001 ATGAAATTGCAGGTGATGATGAATTCAATGAATGTTCCTTCCAAAAGAAGTACGTTGGAGAGGAAACTTGACAAGCTCATACTCGCTCTTTTTGCAACACTCTTTATGATGTGTTTTATTGGAGCCATAGGCAGTGCTATTTTCGTGAACAAAAAATACTTTTACTTACATCTTGATTCATCAGAGGAGGGATCGGCACAGTTCAATCCAAAAAACAGATTTGTGGTTTTTTTTCTGACTATGTTTACCCTTATCACACTATATTCAACAATCATCCCAATTTCACTTTATGTGTCTATAGAGATGATAAAATTTATCCAATCAACTCAATTTATCAACAAGGATTTGGGCATGTACCACAATGAAAGCAATACACCGGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGACAGGTGGAATACATTTTCTCTGACAAAACTGGGACCCTAACAAGAAACTTAATGGAGTTCTTCAAGTGTTCGATTGGAGCAGAGGTCTATGGAAATGGTGTGACCGAAATTGAGAGGGGACTAGCAGAGCGCAATGGCATGAAAATTGAGGAAAATAGATCGCCCAATGCTGTGCAAGAGAAGGGTTTTAATTTTGATGATGCGCGGCTTATGAGAGGAGCTTGGAGAAATGAGCCCAATCCAGATGCCTGCAAA 672 0.3914 MKLQVMMNSMNVPSKRSTLERKLDKLILALFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPKNRFVVFFLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLGMYHNESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGAEVYGNGVTEIERGLAERNGMKIEENRSPNAVQEKGFNFDDARLMRGAWRNEPNPDACK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5832g00001 224 ProSitePatterns E1-E2 ATPases phosphorylation site. 147 153 IPR018303 -
Trme5832g00001 224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 217 - -
Trme5832g00001 224 FunFam Phospholipid-transporting ATPase IC 142 154 - -
Trme5832g00001 224 Gene3D - 142 154 IPR023214 -
Trme5832g00001 224 Gene3D - 155 187 IPR023299 GO:0000166
Trme5832g00001 224 SUPERFAMILY Calcium ATPase, transmembrane domain M 10 139 IPR023298 -
Trme5832g00001 224 NCBIfam HAD-IC family P-type ATPase 75 167 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme5832g00001 224 Gene3D - 11 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5832g00001 Trme-Chr5832 311 1861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5832g00001 4 224 Primary Pumps ATPases AT1G59820 69.820 1.56e-103 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5832g00001 K14802 - gmx:100815547 421.394