Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme583185g00001 TTGGATTGGCACATTAGATTCAAGATAATACTCGGATCAGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCCCCTCCTATTGTTCATAGAGACATTAAGGCCAACAACATCCTCATAGGCCTTGAATTTGAACCATACATAGCTGATTTTGGACTCGCAAAACTTGTCGATGATGGAGATTTTGCAAGATCTTCAAGTACACTAGCCGGTTCTTATGGTTACATAGCTCCTGGTTAG 240 0.4083 MDWHIRFKIILGSAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPG 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme583185g00001 79 SUPERFAMILY Protein kinase-like (PK-like) 1 78 IPR011009 -
Trme583185g00001 79 Pfam Protein kinase domain 8 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme583185g00001 79 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 78 - -
Trme583185g00001 79 Gene3D Transferase(Phosphotransferase) domain 1 1 79 - -
Trme583185g00001 79 FunFam Os07g0541700 protein 1 72 - -
Trme583185g00001 79 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Trme583185g00001 79 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme583185g00001 Trme-Chr583185 1 240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme583185g00001 1 78 Receptor kinase-like Gene Family AT5G65710 59.756 5.08e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme583185g00001 Pkinase 1.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme583185g00001 - - lja:Lj0g3v0313469.1 153.295