Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme582981g00001 CTGATCGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGATAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAACGATGCTCCAGCTTTGAAAAGGGCTGACATTGGTATCGCTGTTGCTGATGCT 165 0.4364 MIEKADGFAGVFPEHKYEIVKKLQDRKHICGMTGDGVNDAPALKRADIGIAVADA 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme582981g00001 55 PANTHER CALCIUM-TRANSPORTING ATPASE 1 55 - -
Trme582981g00001 55 FunFam Plasma membrane ATPase 1 55 - -
Trme582981g00001 55 PRINTS H+-transporting ATPase (proton pump) signature 5 21 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme582981g00001 55 PRINTS H+-transporting ATPase (proton pump) signature 33 49 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme582981g00001 55 Pfam haloacid dehalogenase-like hydrolase 6 47 - -
Trme582981g00001 55 NCBIfam HAD-IC family P-type ATPase 8 52 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme582981g00001 55 SUPERFAMILY HAD-like 4 54 IPR036412 -
Trme582981g00001 55 Gene3D - 1 55 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme582981g00001 Trme-Chr582981 1 267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme582981g00001 1 55 Primary Pumps ATPases AT3G42640 94.545 1.37e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme582981g00001 K01535 - twl:120011147 112.849