Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme58262g00001 GTAAAGGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTATACCACAGCCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGTCAGCCGCTTTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATTAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTATACAGAGTTTAAGTTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGAGAATGCCACCTGAGGCCGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACAGCCTTGGAGGCTTTGGTTCATCCATTCTTCGATGAGCTGCGCGATCCCAACACTAG 425 0.4353 VKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNT 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme58262g00001 141 SMART serkin_6 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme58262g00001 141 FunFam Mitogen-activated protein kinase 5 141 - -
Trme58262g00001 141 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme58262g00001 141 Pfam Protein kinase domain 7 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme58262g00001 141 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
Trme58262g00001 141 SUPERFAMILY Protein kinase-like (PK-like) 4 139 IPR011009 -
Trme58262g00001 141 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme58262g00001 Trme-Chr58262 38 834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme58262g00001 9 138 MAP Kinase Gene Family AT3G59790 38.636 1.25e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trme58262g00001 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme58262g00001 K27413 - qsa:O6P43_007300 295.049