Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme581426g00001 ATGACGAGAAAGAAGGTGAAACTTGCGTTTATCACCGATGACTCGGCAAGAAGGGAAAGCTACAATAAAAGAAAGAAGGGTCTCATAAAGAAG 93 0.4086 MTRKKVKLAFITDDSARRESYNKRKKGLIKK 31
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme581426g00001 31 SUPERFAMILY SRF-like 1 31 IPR036879 GO:0003677|GO:0046983
Trme581426g00001 31 ProSiteProfiles MADS-box domain profile. 1 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme581426g00001 Trme-Chr581426 8 100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme581426g00001 1 31 Type I MADS-box Gene Family AT3G05860 61.290 6.90e-08 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme581426g00001 SRF-TF 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme581426g00001 - - mnt:21401287 53.9138