Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme580616g00001 ATGAGATTGAAGATAGCATTAGAGTCAGCTAAAGGTCTCATGTATCTGCACACAGAAGCTGATCCTTCAATATTTCACCGAGATGTAAAATCCAGCAACATATTATTGGACTCCAAATTCACTGCAAAAGTAGCAGATTTTGGACTTTCACGGCTTGCGCCAGTTCCAGATGTTCAAGGAATTGTACCTGGTCATGTATCC 201 0.408 MRLKIALESAKGLMYLHTEADPSIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDVQGIVPGHVS 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme580616g00001 67 PANTHER OS01G0750732 PROTEIN 1 56 - -
Trme580616g00001 67 SUPERFAMILY Protein kinase-like (PK-like) 2 58 IPR011009 -
Trme580616g00001 67 Gene3D Transferase(Phosphotransferase) domain 1 1 64 - -
Trme580616g00001 67 Pfam Protein kinase domain 4 53 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme580616g00001 67 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Trme580616g00001 67 ProSiteProfiles Protein kinase domain profile. 1 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme580616g00001 Trme-Chr580616 1 201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme580616g00001 1 67 Receptor kinase-like Gene Family AT5G01950 67.164 5.40e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme580616g00001 Pkinase 4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme580616g00001 - - vvo:131623420 126.331