Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme580480g00001 ATGATCAATGATGGGTGTCAATGGAGAAAGTACGGACAGAAAATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGTTGCACCATGGCTCATGGCTGTCCAGTGAGAAAACAG 117 0.4701 MINDGCQWRKYGQKMAKGNPCPRAYYRCTMAHGCPVRKQ 39
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme580480g00001 39 ProSiteProfiles WRKY domain profile. 1 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme580480g00001 39 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 39 IPR044810 GO:0003700
Trme580480g00001 39 SMART WRKY_cls 2 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme580480g00001 39 Pfam WRKY DNA -binding domain 3 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme580480g00001 39 SUPERFAMILY WRKY DNA-binding domain 2 39 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme580480g00001 39 Gene3D WRKY domain 1 39 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme580480g00001 Trme-Chr580480 14 219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme580480g00001 1 39 WRKY Transcription Factor Family AT1G62300 94.872 9.54e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme580480g00001 WRKY 1.8e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme580480g00001 - - tpra:123897783 94.7449