Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5798g00001 ATGGATTCTTTTCCTACTTCATCTTCTTCTCCTACTTCTTCCTTTTCTTCCTCAAGATTAAACATTGATGAGAAAACCTCTATTGGTTATCTTTCAGATGGTCTTATAGTTCGAACACAAGAAAGGAAAAAAGGAGTTCCGTGGACAGAAGAAGAGCACAGAAAATTTCTTGTTGGACTCGAGAAGCTTGGAAAAGGAGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACACCAACCCAAGTTGCAAGTCATGCTCAAAAGTACTTTATTCGACTTGCAACCTTGAATAAGAAGAAGAGACGTTCTAGTCTCTTTGACATGGTTGGTAGCGGCAACACAAACAGAACAAATGATCATGAACAGTTCAAATCCAAATGTGAAGCTCATGAGAAAGATAATGCAACTTTGTCACTACTAATAACCTCACTTCAACAACAAACCAAATCAACTGATTATAATAAGCAAAAAATTGAAGATGCTGAGATTGAAGAAGCTGAAGAAACAGAACATGAAGTTGTGCCTGATTGGTTACATCCTCTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATGCAATAACACCTGATCTTGAGTTAACTCTTGCAGTTCCTAAGTCTAATAAGACCATGGAACAAGATAAAACATCTAAGAGTTCAT 679 0.3623 MDSFPTSSSSPTSSFSSSRLNIDEKTSIGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGNTNRTNDHEQFKSKCEAHEKDNATLSLLITSLQQQTKSTDYNKQKIEDAEIEEAEETEHEVVPDWLHPLTKSLNMTLVIPNSSNAITPDLELTLAVPKSNKTMEQDKTSKSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5798g00001 226 ProSiteProfiles SANT domain profile. 48 96 IPR017884 -
Trme5798g00001 226 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 94 IPR006447 GO:0003677
Trme5798g00001 226 SMART sant 44 94 IPR001005 -
Trme5798g00001 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 96 IPR017930 -
Trme5798g00001 226 Gene3D - 46 98 - -
Trme5798g00001 226 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Trme5798g00001 226 PANTHER TRANSCRIPTION FACTOR KUA1 25 181 - -
Trme5798g00001 226 Pfam Myb-like DNA-binding domain 47 92 IPR001005 -
Trme5798g00001 226 CDD SANT 47 92 IPR001005 -
Trme5798g00001 226 FunFam transcription factor MYB1R1 46 97 - -
Trme5798g00001 226 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5798g00001 Trme-Chr5798 1 1857 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme5798g00001 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5798g00001 - - gmx:778052 218.009