Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5794g00001 ACTGAAGTTGTAGTAATTTCTCAAATTGTTGAAGACGTTTTGAGAAAGCTAAAGAGCAGACTATTGAATATTGCCGAATTTCCAATTGGATTGGGTCCCCGTGTGAAACAAGTGATTAAGTTTATTGAAAATCAAACAAGCAAAGTTTGCTTGATTGGGATCTGGGGGATGGGTGGATCAGGTAAAACAACAACAGCCAGAGCTATCTACAACCAAATTCATTTACAATGGAAATTTGTGGATCTCAGTTTCATCGAGAATATTAAAGATATTTGTAACAAAGGTGAAGGAGGGGTTATTCATTTACAAGAACAACTTAAGGGGAAAAGGGCACTCATTGTACTCGATGATGTGAGCACATATGACCAAGTAAAAGAGATATGTGTAAATCGTCATTATTTTGCTCGGGGAAGTGTCTTGATTGTTACATCCAGGGATGTACGCATACTTCAGTTACTTGAAGTTGACCATGTCTATAGCATAAAGGAAATGGACAAAAACAAGTCCCTTGAGCTCTTCAGTTGGCATGCTTTTAGACAACCAAGTCCAATTAAAGACTTCAGACAACTCTCAGAAAACATAGTTGCTTGCTGTGGAGGATTACCACTGGCTCTTGAAGCCATTGGATCTTCCTTACGTAAAAGGACAACAGAAAAATACTTTGAAAATGCACTATCAGAATTAAGGAGAAGTCCCAATGGGAAGGTGCAAAAGGCACTGATAAAAAGCTATGATGATTTAGAGGATTGCCAAAGGAATATATTTCTCGACATTTGTTGTTTCTTTATTGGGAAGGACATAGCTTATGTTACAAAGATACTAAATGGCTGTGGATTTTATGCTGGTACCAAAATAACTGACCTCATAGAGCGGAGCCTCCTAAAAGTTGAAAAGAATAACAAACTCGGAATGCATGATTTGCTACGAGACATGGGAAGAGCAATTGTTGAAAGATCAGCAAAAAAGCCTGGGGAGCGTAGTAGATTGTGGTTTCACGAGGATGGAACAAAAACCGTGGAAGGATTGATTTGGAAGTCGCAAAGCAACAACAATGTTTTCTTCAAGGCTGATTCTTTTAGGAAAATGAAGAAGTTGAGGCTTTTACAACTTGATCATGTTGATCTTACTGGAGATTATGTGCACCTTTCTCAAAAACTGAGATGGCTCCATTGGAAGGGATTTACAGGCGACCGTATACCTGATGAATTTTATCAGAAAAATCTAGTTGTTTTTGAGTTAGAACACAACAATATTGAACAAGTTTGGAATGAAACCAAGGTGTGA 1284 0.3801 TEVVVISQIVEDVLRKLKSRLLNIAEFPIGLGPRVKQVIKFIENQTSKVCLIGIWGMGGSGKTTTARAIYNQIHLQWKFVDLSFIENIKDICNKGEGGVIHLQEQLKGKRALIVLDDVSTYDQVKEICVNRHYFARGSVLIVTSRDVRILQLLEVDHVYSIKEMDKNKSLELFSWHAFRQPSPIKDFRQLSENIVACCGGLPLALEAIGSSLRKRTTEKYFENALSELRRSPNGKVQKALIKSYDDLEDCQRNIFLDICCFFIGKDIAYVTKILNGCGFYAGTKITDLIERSLLKVEKNNKLGMHDLLRDMGRAIVERSAKKPGERSRLWFHEDGTKTVEGLIWKSQSNNNVFFKADSFRKMKKLRLLQLDHVDLTGDYVHLSQKLRWLHWKGFTGDRIPDEFYQKNLVVFELEHNNIEQVWNETKV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5794g00001 427 Gene3D - 163 248 IPR042197 -
Trme5794g00001 427 SUPERFAMILY "Winged helix" DNA-binding domain 235 337 IPR036390 -
Trme5794g00001 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 258 IPR027417 -
Trme5794g00001 427 PRINTS Disease resistance protein signature 360 376 - -
Trme5794g00001 427 PRINTS Disease resistance protein signature 198 212 - -
Trme5794g00001 427 PRINTS Disease resistance protein signature 51 66 - -
Trme5794g00001 427 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 421 IPR044974 GO:0006952
Trme5794g00001 427 Pfam NB-ARC domain 99 247 IPR002182 GO:0043531
Trme5794g00001 427 SUPERFAMILY L domain-like 348 423 - -
Trme5794g00001 427 Gene3D - 10 158 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5794g00001 Trme-Chr5794 328 1911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5794g00001 29 426 WRKY Transcription Factor Family AT5G45050 29.490 2.55e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5794g00001 - - cam:101511388 538.495