Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57946g00001 TCTTCTTCGGCTGCGTCTTGTCCTGGATTGCCTCAGGTTTTCAGGCTTTCGGAGTTGAAAGACGCTACCAATGGTTTCAAGGAGTTTAATGAGCTCGGGAGAGGAAGTTATGGATTTGTTTACAAAGCTGCTTTGGCGGATGGGAGAGTGGTTGCCGTGAAAAGAGCGAACGCTGCCACGATAATACACACCAACAATCGTAACTTCGAAATGGAGTTGGAAATTTTGTGCAAAATTCGTCATGTTAATATTGTTAACTTGTTGGGTTATTGTGCCGAGATGGGTGAGAGGTTACTTGTTTATGAGTATATGTCTCATGGGACACTTTCTGATCACATTCATGGTGGTCTTTCTCCTCTTAATTGGAGCTTAAGGCTTAAGATAGCTATGCAATCTGCAAAGGGTGTAGAGTACCTTCACAAAGAACTGTTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCTAATATTCTTTTGGATTCAGAATGGGGGGCCAGAGTTTCCGACTTTGGACTTCTTACTTCGAGTGATAAAGATCTTAACGGCGACATGGAAAGTGATGTTTACAGCTTTGGGATTGTGTTGTTGGAAATTCTAAGCGGAAGGAAGGCTTTTGATAGAGATTTTGATCCACCTAATGTTGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGTAAGGCAGCTGCCATAATTGATCGCTACGTCGCTCTTCCGAGAAATGTCGAGCCTTTGCTTAAACTCGGCGATATAGCAGAGCTTGCTGTGAGAGAGAATCCGAGTGAGCGTCCATCTATGTCGGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGATGGATTGATCTTATAA 849 0.4311 SSSAASCPGLPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRNFEMELEILCKIRHVNIVNLLGYCAEMGERLLVYEYMSHGTLSDHIHGGLSPLNWSLRLKIAMQSAKGVEYLHKELLPPIVHKDLKSSNILLDSEWGARVSDFGLLTSSDKDLNGDMESDVYSFGIVLLEILSGRKAFDRDFDPPNVVEWAVPLIKQGKAAAIIDRYVALPRNVEPLLKLGDIAELAVRENPSERPSMSDIASWLEQIVKDGLIL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57946g00001 282 FunFam serine/threonine-protein kinase-like protein CCR1 1 103 - -
Trme57946g00001 282 FunFam Serine/threonine-protein kinase-like protein CCR1 181 279 - -
Trme57946g00001 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Trme57946g00001 282 SMART serkin_6 26 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme57946g00001 282 PANTHER OS01G0750732 PROTEIN 2 277 - -
Trme57946g00001 282 Pfam Protein tyrosine and serine/threonine kinase 30 178 IPR001245 GO:0004672|GO:0006468
Trme57946g00001 282 Gene3D Transferase(Phosphotransferase) domain 1 104 180 - -
Trme57946g00001 282 Gene3D Transferase(Phosphotransferase) domain 1 181 279 - -
Trme57946g00001 282 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Trme57946g00001 282 FunFam Serine/threonine-protein kinase-like protein CCR1 104 180 - -
Trme57946g00001 282 PIRSF ILK 174 279 - -
Trme57946g00001 282 PIRSF ILK 15 181 - -
Trme57946g00001 282 Gene3D Phosphorylase Kinase; domain 1 4 103 - -
Trme57946g00001 282 ProSiteProfiles Protein kinase domain profile. 26 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme57946g00001 282 SUPERFAMILY Protein kinase-like (PK-like) 7 273 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57946g00001 Trme-Chr57946 50 898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57946g00001 12 274 Receptor kinase-like Gene Family AT3G59420 43.448 3.54e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme57946g00001 PK_Tyr_Ser-Thr 3.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57946g00001 - - gmx:100802259 518.464